Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15965

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15960 and AO356_15965 are separated by 152 nucleotidesAO356_15965 and AO356_15970 are separated by 60 nucleotidesAO356_15970 and AO356_15975 are separated by 52 nucleotidesAO356_15975 and AO356_15980 overlap by 4 nucleotides AO356_15960: AO356_15960 - chemotaxis protein, at 3,610,798 to 3,612,423 _15960 AO356_15965: AO356_15965 - NADH dehydrogenase, at 3,612,576 to 3,613,874 _15965 AO356_15970: AO356_15970 - 50s ribosomal protein l13, at 3,613,935 to 3,614,108 _15970 AO356_15975: AO356_15975 - molybdenum cofactor sulfurase, at 3,614,161 to 3,614,688 _15975 AO356_15980: AO356_15980 - hypothetical protein, at 3,614,685 to 3,615,311 _15980 Position (kb) 3612 3613 3614Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3611.682 kb on + strand, within AO356_15960at 3612.049 kb on + strand, within AO356_15960at 3612.544 kb on - strandat 3612.544 kb on - strandat 3612.544 kb on - strandat 3612.679 kb on + strandat 3612.691 kb on + strandat 3612.691 kb on + strandat 3612.691 kb on + strandat 3612.692 kb on - strandat 3612.692 kb on - strandat 3612.692 kb on - strandat 3612.723 kb on + strand, within AO356_15965at 3612.723 kb on + strand, within AO356_15965at 3612.724 kb on - strand, within AO356_15965at 3612.724 kb on - strand, within AO356_15965at 3612.793 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.802 kb on + strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.803 kb on - strand, within AO356_15965at 3612.809 kb on - strand, within AO356_15965at 3612.975 kb on + strand, within AO356_15965at 3612.975 kb on + strand, within AO356_15965at 3612.975 kb on + strand, within AO356_15965at 3612.975 kb on + strand, within AO356_15965at 3612.976 kb on - strand, within AO356_15965at 3612.976 kb on - strand, within AO356_15965at 3612.987 kb on + strand, within AO356_15965at 3612.988 kb on - strand, within AO356_15965at 3612.988 kb on - strand, within AO356_15965at 3612.988 kb on - strand, within AO356_15965at 3612.988 kb on - strand, within AO356_15965at 3613.199 kb on + strand, within AO356_15965at 3613.286 kb on - strand, within AO356_15965at 3613.310 kb on + strand, within AO356_15965at 3613.311 kb on - strand, within AO356_15965at 3613.311 kb on - strand, within AO356_15965at 3613.411 kb on + strand, within AO356_15965at 3613.411 kb on + strand, within AO356_15965at 3613.412 kb on - strand, within AO356_15965at 3613.412 kb on - strand, within AO356_15965at 3613.412 kb on - strand, within AO356_15965at 3613.585 kb on + strand, within AO356_15965at 3613.585 kb on + strand, within AO356_15965at 3613.585 kb on + strand, within AO356_15965at 3613.681 kb on + strand, within AO356_15965at 3613.681 kb on + strand, within AO356_15965at 3613.681 kb on + strand, within AO356_15965at 3613.681 kb on + strand, within AO356_15965at 3613.682 kb on - strand, within AO356_15965at 3613.682 kb on - strand, within AO356_15965at 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.862 kb on + strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.863 kb on - strandat 3613.880 kb on + strandat 3613.881 kb on - strandat 3613.881 kb on - strandat 3613.893 kb on + strandat 3613.938 kb on + strandat 3613.938 kb on + strandat 3613.938 kb on + strandat 3613.939 kb on - strandat 3613.948 kb on + strandat 3613.948 kb on + strandat 3614.062 kb on + strand, within AO356_15970at 3614.062 kb on + strand, within AO356_15970at 3614.062 kb on + strand, within AO356_15970at 3614.063 kb on - strand, within AO356_15970at 3614.063 kb on - strand, within AO356_15970at 3614.108 kb on + strandat 3614.108 kb on + strandat 3614.109 kb on - strandat 3614.109 kb on - strandat 3614.109 kb on - strandat 3614.124 kb on + strandat 3614.124 kb on + strandat 3614.124 kb on + strandat 3614.246 kb on - strand, within AO356_15975at 3614.279 kb on - strand, within AO356_15975at 3614.292 kb on + strand, within AO356_15975at 3614.293 kb on - strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.416 kb on + strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.417 kb on - strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.418 kb on + strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975at 3614.419 kb on - strand, within AO356_15975

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,611,682 + AO356_15960 0.54 -1.2
3,612,049 + AO356_15960 0.77 -0.1
3,612,544 - +0.4
3,612,544 - +0.0
3,612,544 - -0.2
3,612,679 + +0.5
3,612,691 + -0.2
3,612,691 + -0.2
3,612,691 + +0.4
3,612,692 - +0.4
3,612,692 - +1.3
3,612,692 - -1.0
3,612,723 + AO356_15965 0.11 -0.4
3,612,723 + AO356_15965 0.11 +0.4
3,612,724 - AO356_15965 0.11 +0.2
3,612,724 - AO356_15965 0.11 -0.7
3,612,793 + AO356_15965 0.17 +0.1
3,612,802 + AO356_15965 0.17 +0.1
3,612,802 + AO356_15965 0.17 +0.3
3,612,802 + AO356_15965 0.17 +0.2
3,612,802 + AO356_15965 0.17 -0.9
3,612,802 + AO356_15965 0.17 -0.2
3,612,802 + AO356_15965 0.17 -0.2
3,612,802 + AO356_15965 0.17 +0.2
3,612,803 - AO356_15965 0.17 +0.6
3,612,803 - AO356_15965 0.17 +0.6
3,612,803 - AO356_15965 0.17 +0.3
3,612,803 - AO356_15965 0.17 -0.2
3,612,803 - AO356_15965 0.17 -1.0
3,612,803 - AO356_15965 0.17 +1.5
3,612,803 - AO356_15965 0.17 +0.8
3,612,809 - AO356_15965 0.18 +0.8
3,612,975 + AO356_15965 0.31 -0.6
3,612,975 + AO356_15965 0.31 +0.4
3,612,975 + AO356_15965 0.31 +0.6
3,612,975 + AO356_15965 0.31 +1.9
3,612,976 - AO356_15965 0.31 +0.3
3,612,976 - AO356_15965 0.31 +0.5
3,612,987 + AO356_15965 0.32 +0.5
3,612,988 - AO356_15965 0.32 -0.7
3,612,988 - AO356_15965 0.32 -0.2
3,612,988 - AO356_15965 0.32 -0.0
3,612,988 - AO356_15965 0.32 +0.3
3,613,199 + AO356_15965 0.48 -1.4
3,613,286 - AO356_15965 0.55 +0.7
3,613,310 + AO356_15965 0.57 -0.7
3,613,311 - AO356_15965 0.57 +0.3
3,613,311 - AO356_15965 0.57 -0.1
3,613,411 + AO356_15965 0.64 +0.7
3,613,411 + AO356_15965 0.64 -0.0
3,613,412 - AO356_15965 0.64 +0.2
3,613,412 - AO356_15965 0.64 +1.6
3,613,412 - AO356_15965 0.64 +0.4
3,613,585 + AO356_15965 0.78 -1.4
3,613,585 + AO356_15965 0.78 +0.3
3,613,585 + AO356_15965 0.78 -0.6
3,613,681 + AO356_15965 0.85 +0.2
3,613,681 + AO356_15965 0.85 +0.1
3,613,681 + AO356_15965 0.85 +0.3
3,613,681 + AO356_15965 0.85 -0.8
3,613,682 - AO356_15965 0.85 -0.8
3,613,682 - AO356_15965 0.85 -0.1
3,613,862 + +0.0
3,613,862 + -0.1
3,613,862 + -2.1
3,613,862 + +0.2
3,613,862 + -0.3
3,613,862 + -0.4
3,613,863 - +0.2
3,613,863 - +0.6
3,613,863 - +0.5
3,613,863 - +0.0
3,613,863 - +1.8
3,613,863 - -0.6
3,613,863 - +0.1
3,613,880 + -0.4
3,613,881 - +1.2
3,613,881 - -0.7
3,613,893 + +0.9
3,613,938 + +0.7
3,613,938 + -0.1
3,613,938 + +2.9
3,613,939 - -0.0
3,613,948 + -0.6
3,613,948 + -0.2
3,614,062 + AO356_15970 0.73 -1.7
3,614,062 + AO356_15970 0.73 -0.0
3,614,062 + AO356_15970 0.73 +0.3
3,614,063 - AO356_15970 0.74 +0.1
3,614,063 - AO356_15970 0.74 +0.9
3,614,108 + -0.0
3,614,108 + -1.1
3,614,109 - -1.7
3,614,109 - -0.7
3,614,109 - +0.2
3,614,124 + -0.0
3,614,124 + -0.4
3,614,124 + -0.6
3,614,246 - AO356_15975 0.16 +0.3
3,614,279 - AO356_15975 0.22 +0.4
3,614,292 + AO356_15975 0.25 +0.6
3,614,293 - AO356_15975 0.25 -1.2
3,614,416 + AO356_15975 0.48 -0.8
3,614,416 + AO356_15975 0.48 +1.8
3,614,416 + AO356_15975 0.48 +1.0
3,614,416 + AO356_15975 0.48 +0.6
3,614,416 + AO356_15975 0.48 +0.4
3,614,416 + AO356_15975 0.48 +0.3
3,614,416 + AO356_15975 0.48 +0.0
3,614,416 + AO356_15975 0.48 +0.3
3,614,417 - AO356_15975 0.48 -0.8
3,614,417 - AO356_15975 0.48 +0.6
3,614,417 - AO356_15975 0.48 +0.3
3,614,417 - AO356_15975 0.48 +0.2
3,614,417 - AO356_15975 0.48 -1.2
3,614,417 - AO356_15975 0.48 -0.5
3,614,417 - AO356_15975 0.48 -2.0
3,614,417 - AO356_15975 0.48 -0.1
3,614,417 - AO356_15975 0.48 -0.4
3,614,418 + AO356_15975 0.49 -0.6
3,614,418 + AO356_15975 0.49 -0.3
3,614,418 + AO356_15975 0.49 -0.6
3,614,418 + AO356_15975 0.49 -1.2
3,614,418 + AO356_15975 0.49 -0.7
3,614,418 + AO356_15975 0.49 -0.4
3,614,418 + AO356_15975 0.49 +0.6
3,614,418 + AO356_15975 0.49 +0.1
3,614,418 + AO356_15975 0.49 +0.7
3,614,418 + AO356_15975 0.49 -0.0
3,614,418 + AO356_15975 0.49 -1.7
3,614,418 + AO356_15975 0.49 -0.8
3,614,418 + AO356_15975 0.49 +0.1
3,614,419 - AO356_15975 0.49 +0.3
3,614,419 - AO356_15975 0.49 -1.1
3,614,419 - AO356_15975 0.49 -0.0
3,614,419 - AO356_15975 0.49 +1.2
3,614,419 - AO356_15975 0.49 -0.3
3,614,419 - AO356_15975 0.49 -0.0
3,614,419 - AO356_15975 0.49 -0.4

Or see this region's nucleotide sequence