Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14040 and AO356_14045 are separated by 220 nucleotides AO356_14045 and AO356_14050 are separated by 197 nucleotides AO356_14050 and AO356_14055 are separated by 101 nucleotides
AO356_14040: AO356_14040 - histidine kinase, at 3,185,807 to 3,187,225
_14040
AO356_14045: AO356_14045 - hypothetical protein, at 3,187,446 to 3,188,819
_14045
AO356_14050: AO356_14050 - glutathione S-transferase, at 3,189,017 to 3,189,646
_14050
AO356_14055: AO356_14055 - hexuronate transporter, at 3,189,748 to 3,191,046
_14055
Position (kb)
3187
3188
3189 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3186.453 kb on - strand, within AO356_14040 at 3186.453 kb on - strand, within AO356_14040 at 3186.453 kb on - strand, within AO356_14040 at 3186.453 kb on - strand, within AO356_14040 at 3186.453 kb on - strand, within AO356_14040 at 3186.569 kb on + strand, within AO356_14040 at 3186.570 kb on - strand, within AO356_14040 at 3186.570 kb on - strand, within AO356_14040 at 3186.581 kb on + strand, within AO356_14040 at 3186.582 kb on - strand, within AO356_14040 at 3186.582 kb on - strand, within AO356_14040 at 3186.595 kb on + strand, within AO356_14040 at 3186.595 kb on + strand, within AO356_14040 at 3186.596 kb on - strand, within AO356_14040 at 3186.596 kb on - strand, within AO356_14040 at 3186.596 kb on - strand, within AO356_14040 at 3186.596 kb on - strand, within AO356_14040 at 3186.691 kb on + strand, within AO356_14040 at 3186.691 kb on + strand, within AO356_14040 at 3186.692 kb on - strand, within AO356_14040 at 3186.692 kb on - strand, within AO356_14040 at 3186.978 kb on + strand, within AO356_14040 at 3186.978 kb on + strand, within AO356_14040 at 3186.979 kb on - strand, within AO356_14040 at 3187.052 kb on + strand, within AO356_14040 at 3187.082 kb on + strand, within AO356_14040 at 3187.178 kb on - strand at 3187.239 kb on - strand at 3187.303 kb on + strand at 3187.304 kb on - strand at 3187.304 kb on - strand at 3187.390 kb on - strand at 3187.390 kb on - strand at 3187.390 kb on - strand at 3187.390 kb on - strand at 3187.594 kb on - strand, within AO356_14045 at 3187.594 kb on - strand, within AO356_14045 at 3187.716 kb on + strand, within AO356_14045 at 3187.716 kb on + strand, within AO356_14045 at 3187.716 kb on + strand, within AO356_14045 at 3187.716 kb on + strand, within AO356_14045 at 3187.717 kb on - strand, within AO356_14045 at 3187.717 kb on - strand, within AO356_14045 at 3187.717 kb on - strand, within AO356_14045 at 3187.717 kb on - strand, within AO356_14045 at 3187.717 kb on - strand, within AO356_14045 at 3187.782 kb on + strand, within AO356_14045 at 3187.783 kb on - strand, within AO356_14045 at 3187.783 kb on - strand, within AO356_14045 at 3187.783 kb on - strand, within AO356_14045 at 3187.893 kb on + strand, within AO356_14045 at 3187.894 kb on - strand, within AO356_14045 at 3187.894 kb on - strand, within AO356_14045 at 3187.917 kb on - strand, within AO356_14045 at 3187.917 kb on - strand, within AO356_14045 at 3187.917 kb on - strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.175 kb on + strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.176 kb on - strand, within AO356_14045 at 3188.346 kb on + strand, within AO356_14045 at 3188.346 kb on + strand, within AO356_14045 at 3188.347 kb on - strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.373 kb on + strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.374 kb on - strand, within AO356_14045 at 3188.457 kb on + strand, within AO356_14045 at 3188.491 kb on - strand, within AO356_14045 at 3188.539 kb on - strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.580 kb on + strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.581 kb on - strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.646 kb on + strand, within AO356_14045 at 3188.647 kb on - strand, within AO356_14045 at 3188.647 kb on - strand, within AO356_14045 at 3188.658 kb on + strand, within AO356_14045 at 3188.658 kb on + strand, within AO356_14045 at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.682 kb on + strand at 3188.683 kb on - strand at 3189.018 kb on + strand at 3189.018 kb on + strand at 3189.414 kb on + strand, within AO356_14050 at 3189.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,186,453 - AO356_14040 0.46 +1.5 3,186,453 - AO356_14040 0.46 +0.1 3,186,453 - AO356_14040 0.46 -0.2 3,186,453 - AO356_14040 0.46 +1.0 3,186,453 - AO356_14040 0.46 -0.1 3,186,569 + AO356_14040 0.54 +0.8 3,186,570 - AO356_14040 0.54 +0.2 3,186,570 - AO356_14040 0.54 -0.3 3,186,581 + AO356_14040 0.55 -0.6 3,186,582 - AO356_14040 0.55 +0.9 3,186,582 - AO356_14040 0.55 +0.7 3,186,595 + AO356_14040 0.56 +0.7 3,186,595 + AO356_14040 0.56 -1.5 3,186,596 - AO356_14040 0.56 +0.8 3,186,596 - AO356_14040 0.56 +0.9 3,186,596 - AO356_14040 0.56 -0.3 3,186,596 - AO356_14040 0.56 -1.0 3,186,691 + AO356_14040 0.62 +0.1 3,186,691 + AO356_14040 0.62 +1.0 3,186,692 - AO356_14040 0.62 -1.2 3,186,692 - AO356_14040 0.62 +0.7 3,186,978 + AO356_14040 0.83 +1.1 3,186,978 + AO356_14040 0.83 +0.2 3,186,979 - AO356_14040 0.83 -0.3 3,187,052 + AO356_14040 0.88 +0.0 3,187,082 + AO356_14040 0.90 -0.5 3,187,178 - +0.8 3,187,239 - +0.0 3,187,303 + -0.5 3,187,304 - +0.2 3,187,304 - +1.5 3,187,390 - -1.2 3,187,390 - -2.3 3,187,390 - +1.2 3,187,390 - -0.5 3,187,594 - AO356_14045 0.11 -1.0 3,187,594 - AO356_14045 0.11 +0.8 3,187,716 + AO356_14045 0.20 -0.7 3,187,716 + AO356_14045 0.20 -0.9 3,187,716 + AO356_14045 0.20 +0.7 3,187,716 + AO356_14045 0.20 -1.3 3,187,717 - AO356_14045 0.20 +0.5 3,187,717 - AO356_14045 0.20 +1.1 3,187,717 - AO356_14045 0.20 +0.4 3,187,717 - AO356_14045 0.20 +0.7 3,187,717 - AO356_14045 0.20 +0.3 3,187,782 + AO356_14045 0.24 +0.7 3,187,783 - AO356_14045 0.25 +0.6 3,187,783 - AO356_14045 0.25 -0.3 3,187,783 - AO356_14045 0.25 +0.6 3,187,893 + AO356_14045 0.33 +0.7 3,187,894 - AO356_14045 0.33 -0.9 3,187,894 - AO356_14045 0.33 -1.0 3,187,917 - AO356_14045 0.34 +0.2 3,187,917 - AO356_14045 0.34 +0.7 3,187,917 - AO356_14045 0.34 +0.2 3,188,175 + AO356_14045 0.53 -0.0 3,188,175 + AO356_14045 0.53 -0.9 3,188,175 + AO356_14045 0.53 +1.4 3,188,175 + AO356_14045 0.53 +0.2 3,188,175 + AO356_14045 0.53 +1.7 3,188,175 + AO356_14045 0.53 -1.2 3,188,175 + AO356_14045 0.53 +0.5 3,188,175 + AO356_14045 0.53 +0.7 3,188,175 + AO356_14045 0.53 -1.1 3,188,175 + AO356_14045 0.53 +0.1 3,188,175 + AO356_14045 0.53 +0.3 3,188,176 - AO356_14045 0.53 -1.3 3,188,176 - AO356_14045 0.53 -0.1 3,188,176 - AO356_14045 0.53 +0.7 3,188,176 - AO356_14045 0.53 +1.4 3,188,176 - AO356_14045 0.53 +0.4 3,188,346 + AO356_14045 0.66 +0.7 3,188,346 + AO356_14045 0.66 +0.5 3,188,347 - AO356_14045 0.66 +1.7 3,188,373 + AO356_14045 0.67 -1.3 3,188,373 + AO356_14045 0.67 +0.6 3,188,373 + AO356_14045 0.67 +0.5 3,188,373 + AO356_14045 0.67 +0.4 3,188,373 + AO356_14045 0.67 +0.1 3,188,373 + AO356_14045 0.67 -0.2 3,188,374 - AO356_14045 0.68 -0.5 3,188,374 - AO356_14045 0.68 +2.2 3,188,374 - AO356_14045 0.68 -0.6 3,188,457 + AO356_14045 0.74 +0.2 3,188,491 - AO356_14045 0.76 -0.3 3,188,539 - AO356_14045 0.80 +0.4 3,188,580 + AO356_14045 0.83 -0.1 3,188,580 + AO356_14045 0.83 -0.2 3,188,580 + AO356_14045 0.83 -0.6 3,188,581 - AO356_14045 0.83 -0.4 3,188,581 - AO356_14045 0.83 -0.5 3,188,581 - AO356_14045 0.83 +0.2 3,188,581 - AO356_14045 0.83 -0.7 3,188,581 - AO356_14045 0.83 -1.0 3,188,646 + AO356_14045 0.87 -0.9 3,188,646 + AO356_14045 0.87 -0.1 3,188,646 + AO356_14045 0.87 +0.7 3,188,647 - AO356_14045 0.87 +0.2 3,188,647 - AO356_14045 0.87 -0.0 3,188,658 + AO356_14045 0.88 -1.3 3,188,658 + AO356_14045 0.88 +0.5 3,188,682 + -0.3 3,188,682 + -0.6 3,188,682 + +0.5 3,188,682 + +0.0 3,188,683 - +1.0 3,189,018 + +1.3 3,189,018 + +1.7 3,189,414 + AO356_14050 0.63 -0.8 3,189,684 + -1.2
Or see this region's nucleotide sequence