Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13795

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_13790 and AO356_13795 are separated by 147 nucleotidesAO356_13795 and AO356_13800 are separated by 79 nucleotides AO356_13790: AO356_13790 - choline dehydrogenase, at 3,128,255 to 3,129,958 _13790 AO356_13795: AO356_13795 - betaine-aldehyde dehydrogenase, at 3,130,106 to 3,131,578 _13795 AO356_13800: AO356_13800 - transcriptional repressor BetI, at 3,131,658 to 3,132,278 _13800 Position (kb) 3130 3131 3132Strain fitness (log2 ratio) -2 -1 0 1 2at 3129.540 kb on + strand, within AO356_13790at 3129.540 kb on + strand, within AO356_13790at 3129.582 kb on + strand, within AO356_13790at 3129.583 kb on - strand, within AO356_13790at 3129.583 kb on - strand, within AO356_13790at 3129.600 kb on + strand, within AO356_13790at 3129.600 kb on + strand, within AO356_13790at 3129.601 kb on - strand, within AO356_13790at 3129.601 kb on - strand, within AO356_13790at 3129.642 kb on + strand, within AO356_13790at 3129.643 kb on - strand, within AO356_13790at 3129.643 kb on - strand, within AO356_13790at 3129.666 kb on + strand, within AO356_13790at 3129.666 kb on + strand, within AO356_13790at 3129.666 kb on + strand, within AO356_13790at 3129.666 kb on + strand, within AO356_13790at 3129.666 kb on + strand, within AO356_13790at 3129.667 kb on - strand, within AO356_13790at 3129.667 kb on - strand, within AO356_13790at 3129.667 kb on - strand, within AO356_13790at 3129.667 kb on - strand, within AO356_13790at 3129.667 kb on - strand, within AO356_13790at 3129.762 kb on + strand, within AO356_13790at 3129.763 kb on - strand, within AO356_13790at 3129.763 kb on - strand, within AO356_13790at 3129.774 kb on + strand, within AO356_13790at 3129.775 kb on - strand, within AO356_13790at 3129.775 kb on - strand, within AO356_13790at 3129.837 kb on + strandat 3129.939 kb on + strandat 3129.939 kb on + strandat 3129.939 kb on + strandat 3129.939 kb on + strandat 3129.940 kb on - strandat 3129.940 kb on - strandat 3129.940 kb on - strandat 3130.108 kb on - strandat 3130.123 kb on - strandat 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.386 kb on + strand, within AO356_13795at 3130.387 kb on - strand, within AO356_13795at 3130.387 kb on - strand, within AO356_13795at 3130.387 kb on - strand, within AO356_13795at 3130.387 kb on - strand, within AO356_13795at 3130.387 kb on - strand, within AO356_13795at 3130.560 kb on + strand, within AO356_13795at 3130.697 kb on + strand, within AO356_13795at 3130.740 kb on + strand, within AO356_13795at 3130.740 kb on + strand, within AO356_13795at 3130.741 kb on - strand, within AO356_13795at 3130.741 kb on - strand, within AO356_13795at 3130.967 kb on + strand, within AO356_13795at 3130.967 kb on + strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3131.004 kb on + strand, within AO356_13795at 3131.004 kb on + strand, within AO356_13795at 3131.005 kb on - strand, within AO356_13795at 3131.119 kb on - strand, within AO356_13795at 3131.145 kb on - strand, within AO356_13795at 3131.169 kb on + strand, within AO356_13795at 3131.170 kb on - strand, within AO356_13795at 3131.170 kb on - strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.287 kb on - strand, within AO356_13795at 3131.477 kb on + strandat 3131.477 kb on + strandat 3131.478 kb on - strandat 3131.478 kb on - strandat 3131.478 kb on - strandat 3131.535 kb on + strandat 3131.551 kb on - strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.579 kb on - strandat 3131.630 kb on - strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.725 kb on + strand, within AO356_13800at 3131.878 kb on + strand, within AO356_13800at 3131.879 kb on - strand, within AO356_13800at 3132.091 kb on + strand, within AO356_13800at 3132.091 kb on + strand, within AO356_13800at 3132.092 kb on - strand, within AO356_13800at 3132.134 kb on - strand, within AO356_13800at 3132.134 kb on - strand, within AO356_13800at 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.293 kb on + strandat 3132.293 kb on + strandat 3132.293 kb on + strandat 3132.294 kb on - strandat 3132.294 kb on - strandat 3132.294 kb on - strandat 3132.341 kb on - strandat 3132.341 kb on - strandat 3132.383 kb on + strandat 3132.383 kb on + strandat 3132.384 kb on - strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.487 kb on + strandat 3132.487 kb on + strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
3,129,540 + AO356_13790 0.75 -0.9
3,129,540 + AO356_13790 0.75 -0.3
3,129,582 + AO356_13790 0.78 +0.4
3,129,583 - AO356_13790 0.78 -0.3
3,129,583 - AO356_13790 0.78 +0.7
3,129,600 + AO356_13790 0.79 -0.0
3,129,600 + AO356_13790 0.79 -0.3
3,129,601 - AO356_13790 0.79 -0.7
3,129,601 - AO356_13790 0.79 -1.3
3,129,642 + AO356_13790 0.81 -2.0
3,129,643 - AO356_13790 0.81 -1.0
3,129,643 - AO356_13790 0.81 -0.1
3,129,666 + AO356_13790 0.83 +0.1
3,129,666 + AO356_13790 0.83 -0.5
3,129,666 + AO356_13790 0.83 -1.3
3,129,666 + AO356_13790 0.83 -0.3
3,129,666 + AO356_13790 0.83 -0.3
3,129,667 - AO356_13790 0.83 -0.2
3,129,667 - AO356_13790 0.83 -1.1
3,129,667 - AO356_13790 0.83 +0.7
3,129,667 - AO356_13790 0.83 -1.7
3,129,667 - AO356_13790 0.83 +0.7
3,129,762 + AO356_13790 0.88 -1.5
3,129,763 - AO356_13790 0.88 -0.3
3,129,763 - AO356_13790 0.88 -0.6
3,129,774 + AO356_13790 0.89 -1.1
3,129,775 - AO356_13790 0.89 -1.0
3,129,775 - AO356_13790 0.89 -1.5
3,129,837 + -1.8
3,129,939 + -1.1
3,129,939 + +0.1
3,129,939 + +0.1
3,129,939 + -1.2
3,129,940 - -0.1
3,129,940 - +0.4
3,129,940 - -0.9
3,130,108 - +1.0
3,130,123 - +1.2
3,130,386 + AO356_13795 0.19 -0.0
3,130,386 + AO356_13795 0.19 -0.3
3,130,386 + AO356_13795 0.19 +0.2
3,130,386 + AO356_13795 0.19 +1.3
3,130,386 + AO356_13795 0.19 +1.0
3,130,386 + AO356_13795 0.19 -1.9
3,130,386 + AO356_13795 0.19 -0.6
3,130,386 + AO356_13795 0.19 -0.7
3,130,386 + AO356_13795 0.19 -0.3
3,130,387 - AO356_13795 0.19 +1.2
3,130,387 - AO356_13795 0.19 -0.1
3,130,387 - AO356_13795 0.19 -1.1
3,130,387 - AO356_13795 0.19 +0.7
3,130,387 - AO356_13795 0.19 +0.9
3,130,560 + AO356_13795 0.31 +1.7
3,130,697 + AO356_13795 0.40 -0.3
3,130,740 + AO356_13795 0.43 -0.8
3,130,740 + AO356_13795 0.43 -0.3
3,130,741 - AO356_13795 0.43 +0.1
3,130,741 - AO356_13795 0.43 -0.7
3,130,967 + AO356_13795 0.58 -0.7
3,130,967 + AO356_13795 0.58 -0.9
3,130,968 - AO356_13795 0.59 -0.1
3,130,968 - AO356_13795 0.59 +0.7
3,130,968 - AO356_13795 0.59 -1.9
3,130,968 - AO356_13795 0.59 +0.1
3,130,968 - AO356_13795 0.59 +0.2
3,130,968 - AO356_13795 0.59 -1.0
3,130,968 - AO356_13795 0.59 -1.3
3,131,004 + AO356_13795 0.61 +0.7
3,131,004 + AO356_13795 0.61 -0.4
3,131,005 - AO356_13795 0.61 -0.1
3,131,119 - AO356_13795 0.69 -0.5
3,131,145 - AO356_13795 0.71 -0.6
3,131,169 + AO356_13795 0.72 -0.1
3,131,170 - AO356_13795 0.72 +0.0
3,131,170 - AO356_13795 0.72 -1.3
3,131,232 + AO356_13795 0.76 -2.7
3,131,232 + AO356_13795 0.76 +0.3
3,131,232 + AO356_13795 0.76 -0.2
3,131,233 - AO356_13795 0.77 -1.3
3,131,233 - AO356_13795 0.77 +0.1
3,131,233 - AO356_13795 0.77 -0.1
3,131,235 + AO356_13795 0.77 +0.7
3,131,235 + AO356_13795 0.77 -0.8
3,131,235 + AO356_13795 0.77 -0.8
3,131,235 + AO356_13795 0.77 -0.3
3,131,235 + AO356_13795 0.77 -1.3
3,131,236 - AO356_13795 0.77 -0.5
3,131,236 - AO356_13795 0.77 -0.8
3,131,236 - AO356_13795 0.77 -1.9
3,131,287 - AO356_13795 0.80 -1.8
3,131,477 + -0.4
3,131,477 + +0.2
3,131,478 - -1.3
3,131,478 - -0.1
3,131,478 - -1.5
3,131,535 + -1.8
3,131,551 - +0.2
3,131,578 + -2.0
3,131,578 + -0.1
3,131,578 + -0.8
3,131,578 + -0.9
3,131,579 - +0.4
3,131,630 - +1.0
3,131,631 + -0.8
3,131,631 + -0.4
3,131,631 + -0.6
3,131,631 + +0.2
3,131,719 + -0.1
3,131,719 + -1.8
3,131,719 + +0.2
3,131,719 + -0.8
3,131,719 + -1.5
3,131,719 + -0.3
3,131,719 + +0.7
3,131,720 - AO356_13800 0.10 +0.4
3,131,720 - AO356_13800 0.10 -0.2
3,131,720 - AO356_13800 0.10 -0.8
3,131,720 - AO356_13800 0.10 +0.0
3,131,720 - AO356_13800 0.10 -2.3
3,131,720 - AO356_13800 0.10 -1.8
3,131,720 - AO356_13800 0.10 -2.5
3,131,720 - AO356_13800 0.10 -1.4
3,131,720 - AO356_13800 0.10 -1.3
3,131,725 + AO356_13800 0.11 -0.8
3,131,878 + AO356_13800 0.35 -1.1
3,131,879 - AO356_13800 0.36 +0.3
3,132,091 + AO356_13800 0.70 -1.5
3,132,091 + AO356_13800 0.70 -0.3
3,132,092 - AO356_13800 0.70 -0.5
3,132,134 - AO356_13800 0.77 -0.5
3,132,134 - AO356_13800 0.77 -0.3
3,132,280 + +0.1
3,132,280 + -1.4
3,132,280 + +1.0
3,132,280 + +0.7
3,132,280 + -2.3
3,132,280 + +1.1
3,132,280 + -1.1
3,132,280 + +0.0
3,132,280 + -0.1
3,132,280 + -2.0
3,132,280 + -1.4
3,132,281 - -1.7
3,132,281 - -0.1
3,132,281 - -0.9
3,132,281 - -0.6
3,132,281 - -1.1
3,132,281 - -0.9
3,132,281 - +0.7
3,132,281 - +0.3
3,132,281 - -1.9
3,132,281 - -0.3
3,132,293 + -1.9
3,132,293 + -0.3
3,132,293 + -0.3
3,132,294 - -1.1
3,132,294 - +0.7
3,132,294 - +0.5
3,132,341 - +0.1
3,132,341 - +1.0
3,132,383 + +0.2
3,132,383 + -0.5
3,132,384 - +0.4
3,132,420 + -0.6
3,132,420 + +0.8
3,132,420 + +2.2
3,132,420 + -1.3
3,132,420 + -1.2
3,132,420 + -1.8
3,132,421 - +0.8
3,132,421 - +0.3
3,132,421 - +0.4
3,132,421 - +0.7
3,132,421 - -0.2
3,132,421 - -0.9
3,132,485 + -1.3
3,132,485 + +0.7
3,132,485 + -0.5
3,132,485 + -0.7
3,132,486 - -0.1
3,132,486 - +0.9
3,132,486 - +0.8
3,132,486 - +1.1
3,132,487 + +1.2
3,132,487 + +0.7
3,132,488 - -0.1
3,132,488 - +0.9
3,132,488 - +1.6
3,132,488 - +2.0
3,132,488 - +0.8
3,132,488 - -1.8
3,132,488 - +0.0
3,132,488 - +0.4

Or see this region's nucleotide sequence