Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10615

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10605 and AO356_10610 are separated by 32 nucleotidesAO356_10610 and AO356_10615 are separated by 356 nucleotidesAO356_10615 and AO356_10620 are separated by 252 nucleotidesAO356_10620 and AO356_10625 overlap by 11 nucleotides AO356_10605: AO356_10605 - peptide transporter, at 2,412,520 to 2,416,086 _10605 AO356_10610: AO356_10610 - polyketide cyclase, at 2,416,119 to 2,416,583 _10610 AO356_10615: AO356_10615 - chemotaxis protein, at 2,416,940 to 2,418,820 _10615 AO356_10620: AO356_10620 - RNA polymerase subunit sigma, at 2,419,073 to 2,419,573 _10620 AO356_10625: AO356_10625 - peptide ABC transporter substrate-binding protein, at 2,419,563 to 2,420,564 _10625 Position (kb) 2416 2417 2418 2419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2416.043 kb on + strandat 2416.044 kb on - strandat 2416.044 kb on - strandat 2416.044 kb on - strandat 2416.061 kb on - strandat 2416.061 kb on - strandat 2416.395 kb on + strand, within AO356_10610at 2416.395 kb on + strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.396 kb on - strand, within AO356_10610at 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.581 kb on + strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2416.582 kb on - strandat 2417.309 kb on - strand, within AO356_10615at 2417.933 kb on + strand, within AO356_10615at 2417.933 kb on + strand, within AO356_10615at 2417.933 kb on + strand, within AO356_10615at 2417.934 kb on - strand, within AO356_10615at 2418.004 kb on + strand, within AO356_10615at 2418.027 kb on + strand, within AO356_10615at 2418.027 kb on + strand, within AO356_10615at 2418.027 kb on + strand, within AO356_10615at 2418.028 kb on - strand, within AO356_10615at 2418.028 kb on - strand, within AO356_10615at 2418.028 kb on - strand, within AO356_10615at 2418.028 kb on - strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.060 kb on + strand, within AO356_10615at 2418.061 kb on - strand, within AO356_10615at 2418.061 kb on - strand, within AO356_10615at 2418.061 kb on - strand, within AO356_10615at 2418.061 kb on - strand, within AO356_10615at 2418.061 kb on - strand, within AO356_10615at 2418.140 kb on - strand, within AO356_10615at 2418.140 kb on - strand, within AO356_10615at 2418.172 kb on - strand, within AO356_10615at 2418.172 kb on - strand, within AO356_10615at 2418.396 kb on + strand, within AO356_10615at 2418.397 kb on - strand, within AO356_10615at 2418.397 kb on - strand, within AO356_10615at 2418.441 kb on + strand, within AO356_10615at 2418.441 kb on + strand, within AO356_10615at 2418.441 kb on + strand, within AO356_10615at 2418.441 kb on + strand, within AO356_10615at 2418.442 kb on - strand, within AO356_10615at 2418.442 kb on - strand, within AO356_10615at 2418.442 kb on - strand, within AO356_10615at 2418.521 kb on + strand, within AO356_10615at 2418.521 kb on + strand, within AO356_10615at 2418.521 kb on + strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.522 kb on - strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.525 kb on + strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.526 kb on - strand, within AO356_10615at 2418.732 kb on + strandat 2418.732 kb on + strandat 2418.733 kb on - strandat 2418.733 kb on - strandat 2418.733 kb on - strandat 2418.741 kb on + strandat 2418.741 kb on + strandat 2418.741 kb on + strandat 2418.742 kb on - strandat 2418.742 kb on - strandat 2418.812 kb on + strandat 2418.834 kb on + strandat 2418.834 kb on + strandat 2418.834 kb on + strandat 2418.834 kb on + strandat 2418.834 kb on + strandat 2418.835 kb on - strandat 2418.835 kb on - strandat 2418.835 kb on - strandat 2418.835 kb on - strandat 2418.835 kb on - strandat 2418.875 kb on + strandat 2418.875 kb on + strandat 2418.875 kb on + strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.876 kb on - strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.877 kb on + strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.878 kb on - strandat 2418.922 kb on + strandat 2418.923 kb on - strandat 2418.923 kb on - strandat 2418.923 kb on - strandat 2418.923 kb on - strandat 2418.923 kb on - strandat 2418.944 kb on + strandat 2418.944 kb on + strandat 2418.944 kb on + strandat 2418.944 kb on + strandat 2418.944 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.950 kb on + strandat 2418.951 kb on - strandat 2418.951 kb on - strandat 2418.951 kb on - strandat 2418.951 kb on - strandat 2418.951 kb on - strandat 2418.955 kb on - strandat 2418.970 kb on + strandat 2418.971 kb on - strandat 2419.052 kb on - strandat 2419.096 kb on - strandat 2419.096 kb on - strandat 2419.132 kb on + strand, within AO356_10620at 2419.132 kb on + strand, within AO356_10620at 2419.132 kb on + strand, within AO356_10620at 2419.132 kb on + strand, within AO356_10620at 2419.132 kb on + strand, within AO356_10620at 2419.132 kb on + strand, within AO356_10620at 2419.133 kb on - strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.231 kb on + strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.232 kb on - strand, within AO356_10620at 2419.234 kb on + strand, within AO356_10620at 2419.235 kb on - strand, within AO356_10620at 2419.235 kb on - strand, within AO356_10620at 2419.472 kb on + strand, within AO356_10620at 2419.472 kb on + strand, within AO356_10620at 2419.472 kb on + strand, within AO356_10620at 2419.472 kb on + strand, within AO356_10620at 2419.472 kb on + strand, within AO356_10620at 2419.473 kb on - strand, within AO356_10620at 2419.473 kb on - strand, within AO356_10620at 2419.473 kb on - strand, within AO356_10620at 2419.473 kb on - strand, within AO356_10620at 2419.473 kb on - strand, within AO356_10620at 2419.523 kb on + strand, within AO356_10620at 2419.524 kb on - strandat 2419.524 kb on - strandat 2419.541 kb on + strandat 2419.541 kb on + strandat 2419.541 kb on + strandat 2419.541 kb on + strandat 2419.541 kb on + strandat 2419.542 kb on - strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.550 kb on + strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.551 kb on - strandat 2419.562 kb on + strandat 2419.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,416,043 + +0.9
2,416,044 - -0.6
2,416,044 - -0.8
2,416,044 - -0.4
2,416,061 - +1.2
2,416,061 - +0.0
2,416,395 + AO356_10610 0.59 -0.6
2,416,395 + AO356_10610 0.59 +0.3
2,416,396 - AO356_10610 0.60 -0.6
2,416,396 - AO356_10610 0.60 -0.5
2,416,396 - AO356_10610 0.60 -0.4
2,416,581 + -0.1
2,416,581 + +0.7
2,416,581 + -0.9
2,416,581 + -0.4
2,416,581 + -0.6
2,416,581 + +0.4
2,416,582 - -0.1
2,416,582 - -0.5
2,416,582 - -0.1
2,416,582 - +1.0
2,416,582 - +0.2
2,416,582 - -0.7
2,416,582 - -0.4
2,417,309 - AO356_10615 0.20 +0.5
2,417,933 + AO356_10615 0.53 +0.0
2,417,933 + AO356_10615 0.53 +0.2
2,417,933 + AO356_10615 0.53 +1.3
2,417,934 - AO356_10615 0.53 -0.7
2,418,004 + AO356_10615 0.57 -1.2
2,418,027 + AO356_10615 0.58 -0.3
2,418,027 + AO356_10615 0.58 +1.3
2,418,027 + AO356_10615 0.58 +1.1
2,418,028 - AO356_10615 0.58 +0.8
2,418,028 - AO356_10615 0.58 -0.2
2,418,028 - AO356_10615 0.58 +0.7
2,418,028 - AO356_10615 0.58 -0.4
2,418,060 + AO356_10615 0.60 -1.1
2,418,060 + AO356_10615 0.60 +0.7
2,418,060 + AO356_10615 0.60 +1.7
2,418,060 + AO356_10615 0.60 +0.3
2,418,060 + AO356_10615 0.60 -0.3
2,418,060 + AO356_10615 0.60 +0.2
2,418,061 - AO356_10615 0.60 -0.8
2,418,061 - AO356_10615 0.60 +0.9
2,418,061 - AO356_10615 0.60 -0.3
2,418,061 - AO356_10615 0.60 +0.4
2,418,061 - AO356_10615 0.60 -0.0
2,418,140 - AO356_10615 0.64 +1.1
2,418,140 - AO356_10615 0.64 +1.2
2,418,172 - AO356_10615 0.65 -0.9
2,418,172 - AO356_10615 0.65 +1.1
2,418,396 + AO356_10615 0.77 -0.2
2,418,397 - AO356_10615 0.77 -1.1
2,418,397 - AO356_10615 0.77 -0.5
2,418,441 + AO356_10615 0.80 +0.9
2,418,441 + AO356_10615 0.80 +0.7
2,418,441 + AO356_10615 0.80 -1.5
2,418,441 + AO356_10615 0.80 +0.7
2,418,442 - AO356_10615 0.80 -1.8
2,418,442 - AO356_10615 0.80 +0.5
2,418,442 - AO356_10615 0.80 +1.4
2,418,521 + AO356_10615 0.84 +1.3
2,418,521 + AO356_10615 0.84 +1.0
2,418,521 + AO356_10615 0.84 +0.2
2,418,522 - AO356_10615 0.84 +1.2
2,418,522 - AO356_10615 0.84 +0.0
2,418,522 - AO356_10615 0.84 +1.4
2,418,522 - AO356_10615 0.84 -0.8
2,418,522 - AO356_10615 0.84 +0.1
2,418,522 - AO356_10615 0.84 +0.1
2,418,522 - AO356_10615 0.84 +1.0
2,418,522 - AO356_10615 0.84 +0.5
2,418,522 - AO356_10615 0.84 +0.4
2,418,525 + AO356_10615 0.84 +0.8
2,418,525 + AO356_10615 0.84 -0.7
2,418,525 + AO356_10615 0.84 -1.6
2,418,525 + AO356_10615 0.84 -0.6
2,418,525 + AO356_10615 0.84 +0.3
2,418,525 + AO356_10615 0.84 +0.2
2,418,525 + AO356_10615 0.84 +0.3
2,418,525 + AO356_10615 0.84 -0.9
2,418,525 + AO356_10615 0.84 +0.5
2,418,525 + AO356_10615 0.84 -0.3
2,418,525 + AO356_10615 0.84 -0.9
2,418,525 + AO356_10615 0.84 -0.3
2,418,526 - AO356_10615 0.84 +0.4
2,418,526 - AO356_10615 0.84 -0.6
2,418,526 - AO356_10615 0.84 +2.7
2,418,526 - AO356_10615 0.84 +1.1
2,418,526 - AO356_10615 0.84 +0.4
2,418,526 - AO356_10615 0.84 +0.3
2,418,526 - AO356_10615 0.84 -0.2
2,418,526 - AO356_10615 0.84 +1.9
2,418,526 - AO356_10615 0.84 +0.7
2,418,526 - AO356_10615 0.84 +1.3
2,418,526 - AO356_10615 0.84 -1.1
2,418,526 - AO356_10615 0.84 -0.5
2,418,526 - AO356_10615 0.84 -0.6
2,418,526 - AO356_10615 0.84 +0.7
2,418,526 - AO356_10615 0.84 +0.1
2,418,526 - AO356_10615 0.84 +1.3
2,418,526 - AO356_10615 0.84 -0.4
2,418,526 - AO356_10615 0.84 -0.4
2,418,526 - AO356_10615 0.84 +1.7
2,418,732 + -0.5
2,418,732 + +0.8
2,418,733 - -0.3
2,418,733 - -0.5
2,418,733 - +0.7
2,418,741 + -0.0
2,418,741 + +0.7
2,418,741 + +0.4
2,418,742 - +0.8
2,418,742 - +0.7
2,418,812 + +0.3
2,418,834 + -0.7
2,418,834 + -1.6
2,418,834 + -1.4
2,418,834 + -0.3
2,418,834 + +0.4
2,418,835 - -0.1
2,418,835 - +1.3
2,418,835 - -1.0
2,418,835 - +0.3
2,418,835 - +0.8
2,418,875 + -0.2
2,418,875 + -0.4
2,418,875 + -0.5
2,418,876 - -0.6
2,418,876 - +0.1
2,418,876 - +0.1
2,418,876 - -0.9
2,418,876 - +0.7
2,418,876 - +0.5
2,418,876 - -0.3
2,418,876 - -0.5
2,418,876 - +0.0
2,418,877 + -0.1
2,418,877 + -0.6
2,418,877 + -0.5
2,418,877 + -0.0
2,418,877 + -0.6
2,418,877 + +2.1
2,418,877 + -0.3
2,418,877 + -0.1
2,418,877 + -0.8
2,418,878 - -0.2
2,418,878 - -0.3
2,418,878 - +2.0
2,418,878 - +0.2
2,418,878 - -0.9
2,418,878 - -0.7
2,418,878 - +0.8
2,418,878 - +0.9
2,418,878 - +0.4
2,418,878 - +0.2
2,418,878 - +0.1
2,418,878 - -1.3
2,418,922 + -0.2
2,418,923 - +1.7
2,418,923 - +0.7
2,418,923 - -1.3
2,418,923 - -0.3
2,418,923 - +1.3
2,418,944 + -0.1
2,418,944 + -0.1
2,418,944 + -0.6
2,418,944 + -0.1
2,418,944 + +0.4
2,418,950 + -0.1
2,418,950 + -0.9
2,418,950 + -1.2
2,418,950 + -0.6
2,418,950 + +1.2
2,418,950 + +0.1
2,418,950 + +1.1
2,418,951 - +0.4
2,418,951 - -0.2
2,418,951 - -0.1
2,418,951 - -0.2
2,418,951 - -0.9
2,418,955 - -0.2
2,418,970 + -1.5
2,418,971 - -0.1
2,419,052 - +0.5
2,419,096 - -0.2
2,419,096 - +0.5
2,419,132 + AO356_10620 0.12 +0.7
2,419,132 + AO356_10620 0.12 +0.1
2,419,132 + AO356_10620 0.12 +1.0
2,419,132 + AO356_10620 0.12 -1.0
2,419,132 + AO356_10620 0.12 -1.1
2,419,132 + AO356_10620 0.12 -0.3
2,419,133 - AO356_10620 0.12 -0.3
2,419,231 + AO356_10620 0.32 +0.7
2,419,231 + AO356_10620 0.32 -0.1
2,419,231 + AO356_10620 0.32 -0.1
2,419,231 + AO356_10620 0.32 +1.7
2,419,231 + AO356_10620 0.32 +0.4
2,419,231 + AO356_10620 0.32 +0.4
2,419,232 - AO356_10620 0.32 -0.0
2,419,232 - AO356_10620 0.32 -0.4
2,419,232 - AO356_10620 0.32 -0.1
2,419,232 - AO356_10620 0.32 +0.5
2,419,232 - AO356_10620 0.32 +1.1
2,419,232 - AO356_10620 0.32 -0.3
2,419,232 - AO356_10620 0.32 -0.2
2,419,232 - AO356_10620 0.32 +0.9
2,419,232 - AO356_10620 0.32 -0.0
2,419,234 + AO356_10620 0.32 -0.2
2,419,235 - AO356_10620 0.32 -0.2
2,419,235 - AO356_10620 0.32 +0.3
2,419,472 + AO356_10620 0.80 +0.2
2,419,472 + AO356_10620 0.80 +0.7
2,419,472 + AO356_10620 0.80 +0.4
2,419,472 + AO356_10620 0.80 -0.5
2,419,472 + AO356_10620 0.80 +0.4
2,419,473 - AO356_10620 0.80 +0.7
2,419,473 - AO356_10620 0.80 +0.6
2,419,473 - AO356_10620 0.80 +0.1
2,419,473 - AO356_10620 0.80 +0.3
2,419,473 - AO356_10620 0.80 -1.1
2,419,523 + AO356_10620 0.90 +0.4
2,419,524 - +1.5
2,419,524 - +0.4
2,419,541 + -1.1
2,419,541 + -0.6
2,419,541 + -0.2
2,419,541 + +0.7
2,419,541 + +0.7
2,419,542 - -0.3
2,419,550 + +0.4
2,419,550 + -0.2
2,419,550 + -0.2
2,419,550 + -1.5
2,419,550 + +0.7
2,419,550 + +0.9
2,419,550 + -0.3
2,419,551 - -0.9
2,419,551 - +0.9
2,419,551 - +1.7
2,419,551 - +0.5
2,419,551 - +0.8
2,419,551 - +0.7
2,419,551 - -0.9
2,419,551 - -3.0
2,419,562 + -0.5
2,419,562 + +0.5

Or see this region's nucleotide sequence