Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07700

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07695 and AO356_07700 are separated by 165 nucleotidesAO356_07700 and AO356_07705 are separated by 3 nucleotidesAO356_07705 and AO356_07710 overlap by 4 nucleotides AO356_07695: AO356_07695 - LuxR family transcriptional regulator, at 1,710,016 to 1,710,777 _07695 AO356_07700: AO356_07700 - proline iminopeptidase, at 1,710,943 to 1,711,830 _07700 AO356_07705: AO356_07705 - ABC transporter permease, at 1,711,834 to 1,712,781 _07705 AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635 _07710 Position (kb) 1710 1711 1712Strain fitness (log2 ratio) -2 -1 0 1at 1709.946 kb on + strandat 1709.947 kb on - strandat 1709.984 kb on - strandat 1709.999 kb on + strandat 1709.999 kb on + strandat 1709.999 kb on + strandat 1710.021 kb on + strandat 1710.036 kb on - strandat 1710.422 kb on + strand, within AO356_07695at 1710.423 kb on - strand, within AO356_07695at 1710.423 kb on - strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.552 kb on - strand, within AO356_07695at 1710.592 kb on - strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.657 kb on - strand, within AO356_07695at 1710.657 kb on - strand, within AO356_07695at 1710.662 kb on + strand, within AO356_07695at 1710.662 kb on + strand, within AO356_07695at 1710.663 kb on - strand, within AO356_07695at 1710.663 kb on - strand, within AO356_07695at 1710.683 kb on - strand, within AO356_07695at 1710.709 kb on - strandat 1710.792 kb on + strandat 1710.792 kb on + strandat 1710.795 kb on + strandat 1710.795 kb on + strandat 1710.795 kb on + strandat 1710.821 kb on + strandat 1710.821 kb on + strandat 1710.822 kb on - strandat 1710.822 kb on - strandat 1710.863 kb on + strandat 1710.864 kb on - strandat 1710.864 kb on - strandat 1710.864 kb on - strandat 1710.865 kb on + strandat 1710.865 kb on + strandat 1710.866 kb on - strandat 1710.866 kb on - strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.881 kb on - strandat 1710.891 kb on - strandat 1710.974 kb on - strandat 1711.009 kb on + strandat 1711.010 kb on - strandat 1711.075 kb on + strand, within AO356_07700at 1711.165 kb on - strand, within AO356_07700at 1711.195 kb on + strand, within AO356_07700at 1711.195 kb on + strand, within AO356_07700at 1711.196 kb on - strand, within AO356_07700at 1711.208 kb on + strand, within AO356_07700at 1711.209 kb on - strand, within AO356_07700at 1711.209 kb on - strand, within AO356_07700at 1711.348 kb on - strand, within AO356_07700at 1711.457 kb on - strand, within AO356_07700at 1711.457 kb on - strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.591 kb on + strand, within AO356_07700at 1711.727 kb on + strand, within AO356_07700at 1711.727 kb on + strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.769 kb on - strandat 1711.786 kb on + strandat 1711.786 kb on + strandat 1711.786 kb on + strandat 1711.787 kb on - strandat 1711.787 kb on - strandat 1711.829 kb on - strandat 1711.859 kb on + strandat 1711.859 kb on + strandat 1711.859 kb on + strandat 1711.860 kb on - strandat 1711.860 kb on - strandat 1711.880 kb on + strandat 1711.880 kb on + strandat 1711.880 kb on + strandat 1711.880 kb on + strandat 1711.880 kb on + strandat 1711.880 kb on + strandat 1711.881 kb on - strandat 1711.881 kb on - strandat 1712.008 kb on + strand, within AO356_07705at 1712.038 kb on + strand, within AO356_07705at 1712.038 kb on + strand, within AO356_07705at 1712.038 kb on + strand, within AO356_07705at 1712.038 kb on + strand, within AO356_07705at 1712.039 kb on - strand, within AO356_07705at 1712.044 kb on + strand, within AO356_07705at 1712.045 kb on - strand, within AO356_07705at 1712.045 kb on - strand, within AO356_07705at 1712.045 kb on - strand, within AO356_07705at 1712.045 kb on - strand, within AO356_07705at 1712.162 kb on + strand, within AO356_07705at 1712.163 kb on - strand, within AO356_07705at 1712.344 kb on + strand, within AO356_07705at 1712.352 kb on + strand, within AO356_07705at 1712.352 kb on + strand, within AO356_07705at 1712.353 kb on - strand, within AO356_07705at 1712.353 kb on - strand, within AO356_07705at 1712.353 kb on - strand, within AO356_07705at 1712.459 kb on + strand, within AO356_07705at 1712.459 kb on + strand, within AO356_07705at 1712.459 kb on + strand, within AO356_07705at 1712.460 kb on - strand, within AO356_07705at 1712.460 kb on - strand, within AO356_07705at 1712.460 kb on - strand, within AO356_07705at 1712.460 kb on - strand, within AO356_07705at 1712.460 kb on - strand, within AO356_07705at 1712.513 kb on + strand, within AO356_07705at 1712.514 kb on - strand, within AO356_07705at 1712.514 kb on - strand, within AO356_07705at 1712.571 kb on - strand, within AO356_07705at 1712.571 kb on - strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.671 kb on + strand, within AO356_07705at 1712.672 kb on - strand, within AO356_07705

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,709,946 + -2.2
1,709,947 - +0.7
1,709,984 - +1.6
1,709,999 + -0.2
1,709,999 + -0.4
1,709,999 + -1.0
1,710,021 + +1.0
1,710,036 - +0.7
1,710,422 + AO356_07695 0.53 +0.0
1,710,423 - AO356_07695 0.53 -1.0
1,710,423 - AO356_07695 0.53 +0.0
1,710,508 + AO356_07695 0.65 +0.9
1,710,508 + AO356_07695 0.65 +0.3
1,710,508 + AO356_07695 0.65 +0.6
1,710,508 + AO356_07695 0.65 -1.7
1,710,551 + AO356_07695 0.70 -0.1
1,710,551 + AO356_07695 0.70 -0.7
1,710,551 + AO356_07695 0.70 -0.0
1,710,552 - AO356_07695 0.70 +0.8
1,710,592 - AO356_07695 0.76 -0.4
1,710,656 + AO356_07695 0.84 -0.5
1,710,656 + AO356_07695 0.84 -1.9
1,710,656 + AO356_07695 0.84 -0.4
1,710,656 + AO356_07695 0.84 +0.1
1,710,656 + AO356_07695 0.84 +0.6
1,710,657 - AO356_07695 0.84 +0.3
1,710,657 - AO356_07695 0.84 +0.3
1,710,662 + AO356_07695 0.85 -1.0
1,710,662 + AO356_07695 0.85 +0.2
1,710,663 - AO356_07695 0.85 +0.1
1,710,663 - AO356_07695 0.85 -0.1
1,710,683 - AO356_07695 0.88 +0.7
1,710,709 - +1.6
1,710,792 + +0.6
1,710,792 + -0.2
1,710,795 + -0.4
1,710,795 + +1.4
1,710,795 + -0.7
1,710,821 + +0.6
1,710,821 + -0.2
1,710,822 - -0.1
1,710,822 - -0.4
1,710,863 + -0.7
1,710,864 - +0.1
1,710,864 - +0.6
1,710,864 - +0.6
1,710,865 + +1.2
1,710,865 + -0.4
1,710,866 - -1.4
1,710,866 - -0.5
1,710,875 + +0.7
1,710,875 + -0.2
1,710,875 + +0.5
1,710,875 + -1.2
1,710,876 - +1.0
1,710,876 - +0.3
1,710,876 - +0.2
1,710,876 - -0.5
1,710,881 - -0.7
1,710,891 - -0.7
1,710,974 - +1.0
1,711,009 + +0.0
1,711,010 - +0.6
1,711,075 + AO356_07700 0.15 -0.6
1,711,165 - AO356_07700 0.25 -1.0
1,711,195 + AO356_07700 0.28 -0.4
1,711,195 + AO356_07700 0.28 +0.6
1,711,196 - AO356_07700 0.28 +0.1
1,711,208 + AO356_07700 0.30 +0.1
1,711,209 - AO356_07700 0.30 +0.3
1,711,209 - AO356_07700 0.30 +0.6
1,711,348 - AO356_07700 0.46 -1.2
1,711,457 - AO356_07700 0.58 +0.3
1,711,457 - AO356_07700 0.58 -1.5
1,711,483 + AO356_07700 0.61 +0.6
1,711,483 + AO356_07700 0.61 -0.4
1,711,483 + AO356_07700 0.61 +0.4
1,711,558 + AO356_07700 0.69 +0.3
1,711,558 + AO356_07700 0.69 +0.9
1,711,558 + AO356_07700 0.69 -0.4
1,711,558 + AO356_07700 0.69 +0.6
1,711,558 + AO356_07700 0.69 -0.8
1,711,559 - AO356_07700 0.69 -0.6
1,711,559 - AO356_07700 0.69 +0.3
1,711,559 - AO356_07700 0.69 +0.2
1,711,559 - AO356_07700 0.69 +0.4
1,711,559 - AO356_07700 0.69 +0.2
1,711,559 - AO356_07700 0.69 +1.3
1,711,559 - AO356_07700 0.69 -0.7
1,711,591 + AO356_07700 0.73 +0.3
1,711,727 + AO356_07700 0.88 -0.2
1,711,727 + AO356_07700 0.88 -0.7
1,711,728 - AO356_07700 0.88 -2.0
1,711,728 - AO356_07700 0.88 -0.4
1,711,728 - AO356_07700 0.88 -1.2
1,711,728 - AO356_07700 0.88 +0.8
1,711,728 - AO356_07700 0.88 -0.3
1,711,728 - AO356_07700 0.88 +0.8
1,711,728 - AO356_07700 0.88 +0.9
1,711,769 - -0.4
1,711,786 + -1.0
1,711,786 + -1.7
1,711,786 + +0.6
1,711,787 - -0.9
1,711,787 - +0.2
1,711,829 - +0.2
1,711,859 + +0.7
1,711,859 + -1.4
1,711,859 + +0.2
1,711,860 - +0.6
1,711,860 - -0.6
1,711,880 + +0.6
1,711,880 + -0.6
1,711,880 + +0.6
1,711,880 + -0.4
1,711,880 + -0.4
1,711,880 + -0.6
1,711,881 - +0.4
1,711,881 - -0.8
1,712,008 + AO356_07705 0.18 -1.2
1,712,038 + AO356_07705 0.22 -0.6
1,712,038 + AO356_07705 0.22 +0.3
1,712,038 + AO356_07705 0.22 +0.1
1,712,038 + AO356_07705 0.22 -0.4
1,712,039 - AO356_07705 0.22 -0.4
1,712,044 + AO356_07705 0.22 +0.0
1,712,045 - AO356_07705 0.22 -0.8
1,712,045 - AO356_07705 0.22 +0.0
1,712,045 - AO356_07705 0.22 +1.0
1,712,045 - AO356_07705 0.22 +1.0
1,712,162 + AO356_07705 0.35 -0.3
1,712,163 - AO356_07705 0.35 -0.4
1,712,344 + AO356_07705 0.54 -0.7
1,712,352 + AO356_07705 0.55 -0.2
1,712,352 + AO356_07705 0.55 -0.7
1,712,353 - AO356_07705 0.55 +1.1
1,712,353 - AO356_07705 0.55 +0.4
1,712,353 - AO356_07705 0.55 -0.3
1,712,459 + AO356_07705 0.66 +0.1
1,712,459 + AO356_07705 0.66 -0.4
1,712,459 + AO356_07705 0.66 -0.7
1,712,460 - AO356_07705 0.66 +0.4
1,712,460 - AO356_07705 0.66 +0.0
1,712,460 - AO356_07705 0.66 -1.0
1,712,460 - AO356_07705 0.66 -0.4
1,712,460 - AO356_07705 0.66 +0.9
1,712,513 + AO356_07705 0.72 +0.9
1,712,514 - AO356_07705 0.72 +1.2
1,712,514 - AO356_07705 0.72 +0.4
1,712,571 - AO356_07705 0.78 -1.7
1,712,571 - AO356_07705 0.78 -0.9
1,712,671 + AO356_07705 0.88 -0.3
1,712,671 + AO356_07705 0.88 -0.8
1,712,671 + AO356_07705 0.88 -0.4
1,712,671 + AO356_07705 0.88 +0.3
1,712,672 - AO356_07705 0.88 -0.4

Or see this region's nucleotide sequence