Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06840

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06835 and AO356_06840 are separated by 97 nucleotidesAO356_06840 and AO356_06845 are separated by 122 nucleotidesAO356_06845 and AO356_06850 are separated by 131 nucleotides AO356_06835: AO356_06835 - GntR family transcriptional regulator, at 1,509,375 to 1,510,088 _06835 AO356_06840: AO356_06840 - GntR family transcriptional regulator, at 1,510,186 to 1,510,929 _06840 AO356_06845: AO356_06845 - porin, at 1,511,052 to 1,511,774 _06845 AO356_06850: AO356_06850 - peptide ABC transporter ATP-binding protein, at 1,511,906 to 1,512,673 _06850 Position (kb) 1510 1511Strain fitness (log2 ratio) -2 -1 0 1 2at 1509.238 kb on - strandat 1509.377 kb on - strandat 1509.419 kb on + strandat 1509.420 kb on - strandat 1509.420 kb on - strandat 1509.420 kb on - strandat 1509.485 kb on - strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.569 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.805 kb on + strand, within AO356_06835at 1509.806 kb on - strand, within AO356_06835at 1509.806 kb on - strand, within AO356_06835at 1509.872 kb on + strand, within AO356_06835at 1509.984 kb on + strand, within AO356_06835at 1509.984 kb on + strand, within AO356_06835at 1510.095 kb on + strandat 1510.096 kb on - strandat 1510.124 kb on + strandat 1510.125 kb on - strandat 1510.126 kb on + strandat 1510.127 kb on - strandat 1510.127 kb on - strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.154 kb on - strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.156 kb on - strandat 1510.156 kb on - strandat 1510.203 kb on - strandat 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.681 kb on + strand, within AO356_06840at 1510.682 kb on - strand, within AO356_06840at 1510.692 kb on + strand, within AO356_06840at 1510.748 kb on - strand, within AO356_06840at 1510.774 kb on + strand, within AO356_06840at 1510.775 kb on - strand, within AO356_06840at 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.859 kb on - strandat 1510.859 kb on - strandat 1510.919 kb on - strandat 1510.919 kb on - strandat 1510.927 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.123 kb on + strandat 1511.123 kb on + strandat 1511.167 kb on + strand, within AO356_06845at 1511.167 kb on + strand, within AO356_06845at 1511.168 kb on - strand, within AO356_06845at 1511.191 kb on + strand, within AO356_06845at 1511.192 kb on - strand, within AO356_06845at 1511.210 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.236 kb on + strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.249 kb on - strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.255 kb on - strand, within AO356_06845at 1511.278 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.378 kb on - strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.444 kb on - strand, within AO356_06845at 1511.519 kb on - strand, within AO356_06845at 1511.593 kb on + strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.681 kb on - strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.699 kb on + strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.701 kb on + strand, within AO356_06845at 1511.702 kb on - strandat 1511.702 kb on - strandat 1511.782 kb on + strandat 1511.791 kb on + strandat 1511.791 kb on + strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.800 kb on + strandat 1511.801 kb on - strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.917 kb on + strandat 1511.918 kb on - strandat 1511.918 kb on - strandat 1511.921 kb on + strandat 1511.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,509,238 - -0.1
1,509,377 - -0.2
1,509,419 + +0.5
1,509,420 - +1.8
1,509,420 - +0.4
1,509,420 - +0.8
1,509,485 - AO356_06835 0.15 -0.9
1,509,569 + AO356_06835 0.27 -0.3
1,509,569 + AO356_06835 0.27 +0.4
1,509,569 + AO356_06835 0.27 -0.2
1,509,569 + AO356_06835 0.27 -0.2
1,509,805 + AO356_06835 0.60 +0.3
1,509,805 + AO356_06835 0.60 -0.5
1,509,805 + AO356_06835 0.60 +0.2
1,509,806 - AO356_06835 0.60 -0.2
1,509,806 - AO356_06835 0.60 -0.6
1,509,872 + AO356_06835 0.70 -0.2
1,509,984 + AO356_06835 0.85 +0.0
1,509,984 + AO356_06835 0.85 -0.1
1,510,095 + -2.4
1,510,096 - +1.3
1,510,124 + +0.3
1,510,125 - +0.5
1,510,126 + -0.7
1,510,127 - -0.2
1,510,127 - -0.5
1,510,153 + -0.8
1,510,153 + -0.1
1,510,153 + -0.7
1,510,154 - -0.4
1,510,155 + +0.4
1,510,155 + -1.3
1,510,155 + -0.5
1,510,156 - +0.8
1,510,156 - -0.3
1,510,203 - -0.2
1,510,314 + AO356_06840 0.17 -0.4
1,510,314 + AO356_06840 0.17 -0.1
1,510,314 + AO356_06840 0.17 +1.0
1,510,314 + AO356_06840 0.17 +0.4
1,510,314 + AO356_06840 0.17 -0.5
1,510,315 - AO356_06840 0.17 +0.1
1,510,315 - AO356_06840 0.17 +1.8
1,510,315 - AO356_06840 0.17 +1.2
1,510,315 - AO356_06840 0.17 +0.0
1,510,678 + AO356_06840 0.66 +0.9
1,510,678 + AO356_06840 0.66 +0.9
1,510,678 + AO356_06840 0.66 -0.2
1,510,679 - AO356_06840 0.66 +0.1
1,510,679 - AO356_06840 0.66 -0.7
1,510,679 - AO356_06840 0.66 -0.1
1,510,679 - AO356_06840 0.66 +0.8
1,510,681 + AO356_06840 0.67 -0.5
1,510,682 - AO356_06840 0.67 +0.5
1,510,692 + AO356_06840 0.68 -1.1
1,510,748 - AO356_06840 0.76 -0.5
1,510,774 + AO356_06840 0.79 -0.4
1,510,775 - AO356_06840 0.79 -0.8
1,510,858 + +1.5
1,510,858 + +0.1
1,510,858 + -0.5
1,510,858 + +0.5
1,510,859 - -0.5
1,510,859 - -1.8
1,510,919 - +0.5
1,510,919 - +0.7
1,510,927 + +0.1
1,511,065 + -0.2
1,511,065 + -0.3
1,511,065 + +0.5
1,511,065 + +0.7
1,511,066 - -0.7
1,511,066 - -1.5
1,511,066 - -2.1
1,511,066 - -0.5
1,511,066 - -0.2
1,511,123 + -0.8
1,511,123 + -1.5
1,511,167 + AO356_06845 0.16 +0.3
1,511,167 + AO356_06845 0.16 -0.4
1,511,168 - AO356_06845 0.16 +0.5
1,511,191 + AO356_06845 0.19 -0.6
1,511,192 - AO356_06845 0.19 +1.0
1,511,210 + AO356_06845 0.22 -0.8
1,511,221 + AO356_06845 0.23 -0.1
1,511,221 + AO356_06845 0.23 -0.3
1,511,221 + AO356_06845 0.23 +0.0
1,511,222 - AO356_06845 0.24 +0.0
1,511,222 - AO356_06845 0.24 +0.0
1,511,222 - AO356_06845 0.24 -0.4
1,511,236 + AO356_06845 0.25 -0.6
1,511,237 - AO356_06845 0.26 -2.1
1,511,237 - AO356_06845 0.26 -0.3
1,511,249 - AO356_06845 0.27 -1.4
1,511,254 + AO356_06845 0.28 +0.2
1,511,254 + AO356_06845 0.28 +0.7
1,511,254 + AO356_06845 0.28 -0.1
1,511,254 + AO356_06845 0.28 -0.6
1,511,254 + AO356_06845 0.28 +0.1
1,511,254 + AO356_06845 0.28 -0.8
1,511,255 - AO356_06845 0.28 -0.2
1,511,278 + AO356_06845 0.31 +0.4
1,511,287 + AO356_06845 0.33 +0.9
1,511,287 + AO356_06845 0.33 -0.5
1,511,288 - AO356_06845 0.33 -1.6
1,511,288 - AO356_06845 0.33 -0.0
1,511,288 - AO356_06845 0.33 +0.7
1,511,378 - AO356_06845 0.45 -0.5
1,511,443 + AO356_06845 0.54 -0.4
1,511,443 + AO356_06845 0.54 +0.5
1,511,443 + AO356_06845 0.54 -0.7
1,511,443 + AO356_06845 0.54 -1.5
1,511,444 - AO356_06845 0.54 +0.2
1,511,519 - AO356_06845 0.65 -0.2
1,511,593 + AO356_06845 0.75 -0.6
1,511,594 - AO356_06845 0.75 +0.3
1,511,594 - AO356_06845 0.75 -0.8
1,511,681 - AO356_06845 0.87 +0.9
1,511,691 + AO356_06845 0.88 +0.5
1,511,691 + AO356_06845 0.88 -1.1
1,511,692 - AO356_06845 0.89 +0.5
1,511,692 - AO356_06845 0.89 -0.2
1,511,692 - AO356_06845 0.89 +0.1
1,511,692 - AO356_06845 0.89 -0.1
1,511,699 + AO356_06845 0.89 -1.1
1,511,700 - AO356_06845 0.90 +0.9
1,511,700 - AO356_06845 0.90 -0.7
1,511,701 + AO356_06845 0.90 -0.6
1,511,702 - -0.7
1,511,702 - -0.2
1,511,782 + -1.0
1,511,791 + +0.1
1,511,791 + +1.5
1,511,792 - +1.0
1,511,792 - -1.1
1,511,792 - +0.9
1,511,800 + -0.2
1,511,801 - -0.1
1,511,803 + +2.1
1,511,803 + +0.4
1,511,803 + +1.1
1,511,803 + +0.1
1,511,803 + +0.7
1,511,803 + +0.0
1,511,803 + +0.5
1,511,804 - +0.8
1,511,804 - +0.1
1,511,804 - +0.8
1,511,917 + +0.5
1,511,918 - -1.1
1,511,918 - +0.0
1,511,921 + -0.7
1,511,922 - +0.9

Or see this region's nucleotide sequence