Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04580 and AO356_04585 overlap by 32 nucleotides AO356_04585 and AO356_04590 overlap by 17 nucleotides AO356_04590 and AO356_04595 are separated by 149 nucleotides AO356_04595 and AO356_04600 are separated by 35 nucleotides
AO356_04580: AO356_04580 - L-aspartate oxidase, at 1,032,222 to 1,033,838
_04580
AO356_04585: AO356_04585 - hypothetical protein, at 1,033,807 to 1,034,259
_04585
AO356_04590: AO356_04590 - hypothetical protein, at 1,034,243 to 1,034,497
_04590
AO356_04595: AO356_04595 - aminomethyltransferase, at 1,034,647 to 1,035,588
_04595
AO356_04600: AO356_04600 - histidine kinase, at 1,035,624 to 1,036,445
_04600
Position (kb)
1034
1035
1036 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1033.653 kb on + strand, within AO356_04580 at 1033.654 kb on - strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.662 kb on + strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.663 kb on - strand, within AO356_04580 at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.764 kb on + strand at 1033.765 kb on - strand at 1033.765 kb on - strand at 1033.765 kb on - strand at 1033.808 kb on + strand at 1033.808 kb on + strand at 1033.809 kb on - strand at 1033.809 kb on - strand at 1033.809 kb on - strand at 1033.827 kb on + strand at 1033.827 kb on + strand at 1033.827 kb on + strand at 1033.828 kb on - strand at 1033.828 kb on - strand at 1033.968 kb on + strand, within AO356_04585 at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.244 kb on + strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.245 kb on - strand at 1034.514 kb on - strand at 1034.514 kb on - strand at 1034.525 kb on - strand at 1034.525 kb on - strand at 1034.526 kb on + strand at 1034.526 kb on + strand at 1034.526 kb on + strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.527 kb on - strand at 1034.587 kb on + strand at 1034.610 kb on + strand at 1034.611 kb on - strand at 1034.611 kb on - strand at 1034.611 kb on - strand at 1034.619 kb on + strand at 1035.554 kb on - strand at 1035.612 kb on + strand at 1035.786 kb on - strand, within AO356_04600 at 1035.891 kb on + strand, within AO356_04600 at 1035.891 kb on + strand, within AO356_04600 at 1035.891 kb on + strand, within AO356_04600 at 1035.891 kb on + strand, within AO356_04600 at 1035.892 kb on - strand, within AO356_04600 at 1035.953 kb on - strand, within AO356_04600 at 1035.953 kb on - strand, within AO356_04600 at 1035.953 kb on - strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.011 kb on + strand, within AO356_04600 at 1036.012 kb on - strand, within AO356_04600 at 1036.012 kb on - strand, within AO356_04600 at 1036.012 kb on - strand, within AO356_04600 at 1036.029 kb on + strand, within AO356_04600 at 1036.029 kb on + strand, within AO356_04600 at 1036.104 kb on + strand, within AO356_04600 at 1036.104 kb on + strand, within AO356_04600 at 1036.104 kb on + strand, within AO356_04600 at 1036.104 kb on + strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.105 kb on - strand, within AO356_04600 at 1036.119 kb on - strand, within AO356_04600 at 1036.119 kb on - strand, within AO356_04600 at 1036.126 kb on + strand, within AO356_04600 at 1036.127 kb on - strand, within AO356_04600 at 1036.127 kb on - strand, within AO356_04600 at 1036.127 kb on - strand, within AO356_04600 at 1036.127 kb on - strand, within AO356_04600 at 1036.242 kb on + strand, within AO356_04600 at 1036.242 kb on + strand, within AO356_04600 at 1036.242 kb on + strand, within AO356_04600 at 1036.243 kb on - strand, within AO356_04600 at 1036.243 kb on - strand, within AO356_04600 at 1036.278 kb on + strand, within AO356_04600 at 1036.279 kb on - strand, within AO356_04600 at 1036.308 kb on + strand, within AO356_04600 at 1036.308 kb on + strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.309 kb on - strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.314 kb on + strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.315 kb on - strand, within AO356_04600 at 1036.351 kb on + strand, within AO356_04600 at 1036.351 kb on + strand, within AO356_04600 at 1036.351 kb on + strand, within AO356_04600 at 1036.352 kb on - strand, within AO356_04600 at 1036.352 kb on - strand, within AO356_04600 at 1036.352 kb on - strand, within AO356_04600 at 1036.440 kb on + strand at 1036.444 kb on - strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.463 kb on + strand at 1036.464 kb on - strand at 1036.464 kb on - strand at 1036.464 kb on - strand at 1036.464 kb on - strand at 1036.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 1,033,653 + AO356_04580 0.88 -0.7 1,033,654 - AO356_04580 0.89 +0.1 1,033,662 + AO356_04580 0.89 +0.4 1,033,662 + AO356_04580 0.89 -0.6 1,033,662 + AO356_04580 0.89 +0.6 1,033,662 + AO356_04580 0.89 -0.3 1,033,663 - AO356_04580 0.89 -0.3 1,033,663 - AO356_04580 0.89 -1.6 1,033,663 - AO356_04580 0.89 -1.9 1,033,663 - AO356_04580 0.89 +0.6 1,033,764 + -0.9 1,033,764 + +0.1 1,033,764 + +0.4 1,033,764 + +0.3 1,033,764 + +0.7 1,033,765 - +1.2 1,033,765 - +0.9 1,033,765 - -0.6 1,033,808 + -0.8 1,033,808 + +2.4 1,033,809 - -1.1 1,033,809 - +0.9 1,033,809 - -0.7 1,033,827 + +0.4 1,033,827 + -1.0 1,033,827 + +1.1 1,033,828 - -0.6 1,033,828 - -0.9 1,033,968 + AO356_04585 0.36 -1.1 1,034,244 + -0.4 1,034,244 + -1.2 1,034,244 + -0.8 1,034,244 + -0.9 1,034,245 - -0.0 1,034,245 - +0.1 1,034,245 - +0.1 1,034,245 - +0.8 1,034,245 - +0.4 1,034,514 - +0.1 1,034,514 - -0.4 1,034,525 - -1.1 1,034,525 - +0.4 1,034,526 + -1.6 1,034,526 + -1.1 1,034,526 + -1.5 1,034,527 - +1.4 1,034,527 - -1.4 1,034,527 - -0.6 1,034,527 - +0.8 1,034,587 + -0.3 1,034,610 + -0.0 1,034,611 - -0.7 1,034,611 - -1.2 1,034,611 - -3.9 1,034,619 + +0.4 1,035,554 - -0.6 1,035,612 + +0.7 1,035,786 - AO356_04600 0.20 +0.4 1,035,891 + AO356_04600 0.32 +0.7 1,035,891 + AO356_04600 0.32 -1.7 1,035,891 + AO356_04600 0.32 +0.4 1,035,891 + AO356_04600 0.32 -0.4 1,035,892 - AO356_04600 0.33 -0.2 1,035,953 - AO356_04600 0.40 -1.1 1,035,953 - AO356_04600 0.40 -0.4 1,035,953 - AO356_04600 0.40 -0.4 1,036,011 + AO356_04600 0.47 +0.0 1,036,011 + AO356_04600 0.47 -0.9 1,036,011 + AO356_04600 0.47 +1.2 1,036,011 + AO356_04600 0.47 +0.4 1,036,011 + AO356_04600 0.47 +0.4 1,036,011 + AO356_04600 0.47 -0.6 1,036,011 + AO356_04600 0.47 +0.2 1,036,012 - AO356_04600 0.47 +1.3 1,036,012 - AO356_04600 0.47 +0.1 1,036,012 - AO356_04600 0.47 -0.6 1,036,029 + AO356_04600 0.49 -1.8 1,036,029 + AO356_04600 0.49 +0.7 1,036,104 + AO356_04600 0.58 -0.2 1,036,104 + AO356_04600 0.58 +0.2 1,036,104 + AO356_04600 0.58 +0.2 1,036,104 + AO356_04600 0.58 -0.8 1,036,105 - AO356_04600 0.59 -0.6 1,036,105 - AO356_04600 0.59 +0.7 1,036,105 - AO356_04600 0.59 +0.0 1,036,105 - AO356_04600 0.59 +1.7 1,036,105 - AO356_04600 0.59 +0.1 1,036,105 - AO356_04600 0.59 +0.2 1,036,105 - AO356_04600 0.59 -0.6 1,036,119 - AO356_04600 0.60 +0.4 1,036,119 - AO356_04600 0.60 -0.1 1,036,126 + AO356_04600 0.61 +0.4 1,036,127 - AO356_04600 0.61 +0.4 1,036,127 - AO356_04600 0.61 -0.3 1,036,127 - AO356_04600 0.61 -0.7 1,036,127 - AO356_04600 0.61 -2.0 1,036,242 + AO356_04600 0.75 +0.0 1,036,242 + AO356_04600 0.75 +0.8 1,036,242 + AO356_04600 0.75 +0.2 1,036,243 - AO356_04600 0.75 -1.6 1,036,243 - AO356_04600 0.75 -0.5 1,036,278 + AO356_04600 0.80 +0.4 1,036,279 - AO356_04600 0.80 +0.2 1,036,308 + AO356_04600 0.83 +0.4 1,036,308 + AO356_04600 0.83 +0.4 1,036,309 - AO356_04600 0.83 +1.2 1,036,309 - AO356_04600 0.83 +0.4 1,036,309 - AO356_04600 0.83 +0.2 1,036,309 - AO356_04600 0.83 +0.2 1,036,309 - AO356_04600 0.83 -0.6 1,036,309 - AO356_04600 0.83 +1.6 1,036,309 - AO356_04600 0.83 -1.6 1,036,309 - AO356_04600 0.83 -0.1 1,036,314 + AO356_04600 0.84 -0.6 1,036,314 + AO356_04600 0.84 +0.8 1,036,314 + AO356_04600 0.84 -0.6 1,036,314 + AO356_04600 0.84 -0.6 1,036,314 + AO356_04600 0.84 -0.2 1,036,314 + AO356_04600 0.84 +0.4 1,036,314 + AO356_04600 0.84 -1.2 1,036,315 - AO356_04600 0.84 -0.2 1,036,315 - AO356_04600 0.84 -0.6 1,036,315 - AO356_04600 0.84 +1.3 1,036,315 - AO356_04600 0.84 -0.3 1,036,315 - AO356_04600 0.84 +1.0 1,036,315 - AO356_04600 0.84 -0.1 1,036,351 + AO356_04600 0.88 +0.4 1,036,351 + AO356_04600 0.88 -0.6 1,036,351 + AO356_04600 0.88 -0.1 1,036,352 - AO356_04600 0.89 +1.0 1,036,352 - AO356_04600 0.89 +0.7 1,036,352 - AO356_04600 0.89 -0.8 1,036,440 + -0.4 1,036,444 - +0.2 1,036,463 + +1.0 1,036,463 + +0.9 1,036,463 + -0.2 1,036,463 + +0.4 1,036,463 + +0.2 1,036,463 + -1.6 1,036,463 + -0.6 1,036,463 + -0.3 1,036,463 + +2.4 1,036,464 - -0.1 1,036,464 - -0.1 1,036,464 - +0.0 1,036,464 - -0.7 1,036,552 + +0.4
Or see this region's nucleotide sequence