Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04220

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04215 and AO356_04220 are separated by 112 nucleotidesAO356_04220 and AO356_04225 are separated by 381 nucleotides AO356_04215: AO356_04215 - mechanosensitive ion channel protein MscS, at 957,524 to 958,822 _04215 AO356_04220: AO356_04220 - hypothetical protein, at 958,935 to 959,801 _04220 AO356_04225: AO356_04225 - FMN-dependent NADH-azoreductase, at 960,183 to 960,782 _04225 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 957.950 kb on + strand, within AO356_04215at 957.950 kb on + strand, within AO356_04215at 957.951 kb on - strand, within AO356_04215at 957.951 kb on - strand, within AO356_04215at 957.951 kb on - strand, within AO356_04215at 957.951 kb on - strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.977 kb on + strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 957.978 kb on - strand, within AO356_04215at 958.079 kb on + strand, within AO356_04215at 958.079 kb on + strand, within AO356_04215at 958.080 kb on - strand, within AO356_04215at 958.413 kb on - strand, within AO356_04215at 958.413 kb on - strand, within AO356_04215at 958.413 kb on - strand, within AO356_04215at 958.536 kb on - strand, within AO356_04215at 958.626 kb on - strand, within AO356_04215at 958.659 kb on - strand, within AO356_04215at 958.659 kb on - strand, within AO356_04215at 958.678 kb on + strand, within AO356_04215at 958.689 kb on - strand, within AO356_04215at 958.689 kb on - strand, within AO356_04215at 958.728 kb on - strandat 958.728 kb on - strandat 958.871 kb on + strandat 958.882 kb on + strandat 958.883 kb on - strandat 958.883 kb on - strandat 958.883 kb on - strandat 958.992 kb on + strandat 959.010 kb on + strandat 959.010 kb on + strandat 959.140 kb on + strand, within AO356_04220at 959.140 kb on + strand, within AO356_04220at 959.141 kb on - strand, within AO356_04220at 959.141 kb on - strand, within AO356_04220at 959.270 kb on - strand, within AO356_04220at 959.270 kb on - strand, within AO356_04220at 959.270 kb on - strand, within AO356_04220at 959.275 kb on + strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.354 kb on - strand, within AO356_04220at 959.522 kb on + strand, within AO356_04220at 959.522 kb on + strand, within AO356_04220at 959.523 kb on - strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.560 kb on - strand, within AO356_04220at 959.575 kb on + strand, within AO356_04220at 959.575 kb on + strand, within AO356_04220at 959.576 kb on - strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.716 kb on + strandat 959.716 kb on + strandat 959.717 kb on - strandat 959.717 kb on - strandat 959.740 kb on + strandat 959.741 kb on - strandat 959.790 kb on + strandat 959.790 kb on + strandat 959.794 kb on + strandat 959.795 kb on - strandat 959.951 kb on + strandat 959.961 kb on - strandat 959.961 kb on - strandat 959.961 kb on - strandat 959.974 kb on + strandat 960.026 kb on - strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.149 kb on + strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.316 kb on + strand, within AO356_04225at 960.316 kb on + strand, within AO356_04225at 960.421 kb on + strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.493 kb on + strand, within AO356_04225at 960.493 kb on + strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.789 kb on + strandat 960.790 kb on - strandat 960.790 kb on - strandat 960.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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957,950 + AO356_04215 0.33 +0.3
957,950 + AO356_04215 0.33 -0.2
957,951 - AO356_04215 0.33 +0.8
957,951 - AO356_04215 0.33 -1.8
957,951 - AO356_04215 0.33 -0.4
957,951 - AO356_04215 0.33 +0.1
957,977 + AO356_04215 0.35 +0.9
957,977 + AO356_04215 0.35 +0.5
957,977 + AO356_04215 0.35 -0.9
957,977 + AO356_04215 0.35 -1.4
957,977 + AO356_04215 0.35 +0.1
957,977 + AO356_04215 0.35 +1.1
957,977 + AO356_04215 0.35 +1.5
957,977 + AO356_04215 0.35 +0.1
957,977 + AO356_04215 0.35 +0.7
957,977 + AO356_04215 0.35 -0.4
957,978 - AO356_04215 0.35 +0.8
957,978 - AO356_04215 0.35 +0.4
957,978 - AO356_04215 0.35 +0.6
957,978 - AO356_04215 0.35 -0.2
957,978 - AO356_04215 0.35 +0.4
957,978 - AO356_04215 0.35 -0.4
957,978 - AO356_04215 0.35 -1.1
957,978 - AO356_04215 0.35 +0.9
957,978 - AO356_04215 0.35 -0.0
958,079 + AO356_04215 0.43 -0.8
958,079 + AO356_04215 0.43 -0.9
958,080 - AO356_04215 0.43 -0.4
958,413 - AO356_04215 0.68 +0.8
958,413 - AO356_04215 0.68 -0.6
958,413 - AO356_04215 0.68 +0.4
958,536 - AO356_04215 0.78 +0.7
958,626 - AO356_04215 0.85 -0.2
958,659 - AO356_04215 0.87 +0.6
958,659 - AO356_04215 0.87 -0.7
958,678 + AO356_04215 0.89 +0.0
958,689 - AO356_04215 0.90 +0.1
958,689 - AO356_04215 0.90 +0.3
958,728 - +0.7
958,728 - -0.3
958,871 + -0.9
958,882 + +0.4
958,883 - -1.0
958,883 - +0.6
958,883 - +0.1
958,992 + -0.1
959,010 + -0.9
959,010 + -0.0
959,140 + AO356_04220 0.24 -0.9
959,140 + AO356_04220 0.24 -0.6
959,141 - AO356_04220 0.24 -0.5
959,141 - AO356_04220 0.24 -0.8
959,270 - AO356_04220 0.39 +0.3
959,270 - AO356_04220 0.39 -1.3
959,270 - AO356_04220 0.39 -1.2
959,275 + AO356_04220 0.39 -0.6
959,333 - AO356_04220 0.46 -0.3
959,333 - AO356_04220 0.46 -0.3
959,333 - AO356_04220 0.46 +0.2
959,333 - AO356_04220 0.46 -0.9
959,354 - AO356_04220 0.48 -0.5
959,522 + AO356_04220 0.68 +1.1
959,522 + AO356_04220 0.68 +0.0
959,523 - AO356_04220 0.68 -2.9
959,559 + AO356_04220 0.72 -0.0
959,559 + AO356_04220 0.72 +0.1
959,559 + AO356_04220 0.72 +0.8
959,560 - AO356_04220 0.72 -0.0
959,575 + AO356_04220 0.74 -0.6
959,575 + AO356_04220 0.74 +0.5
959,576 - AO356_04220 0.74 +0.1
959,587 + AO356_04220 0.75 +0.1
959,587 + AO356_04220 0.75 -1.2
959,587 + AO356_04220 0.75 +0.8
959,588 - AO356_04220 0.75 -2.6
959,588 - AO356_04220 0.75 -0.9
959,588 - AO356_04220 0.75 -0.6
959,716 + -1.0
959,716 + -0.5
959,717 - -1.9
959,717 - +0.3
959,740 + +0.1
959,741 - -1.1
959,790 + +0.1
959,790 + +1.0
959,794 + -0.6
959,795 - -1.0
959,951 + +0.2
959,961 - +0.2
959,961 - +0.5
959,961 - -0.2
959,974 + +0.0
960,026 - -0.6
960,093 + -0.6
960,093 + +1.3
960,093 + +0.3
960,093 + +1.4
960,093 + -0.7
960,093 + -0.0
960,093 + +1.4
960,093 + +1.9
960,093 + -0.7
960,093 + +1.1
960,093 + -0.1
960,093 + +0.1
960,094 - +0.7
960,094 - +0.4
960,094 - +0.4
960,094 - -0.8
960,094 - -0.4
960,094 - +0.8
960,094 - -0.6
960,149 + +1.1
960,150 - -1.3
960,150 - +0.0
960,150 - -0.1
960,316 + AO356_04225 0.22 +0.6
960,316 + AO356_04225 0.22 +1.1
960,421 + AO356_04225 0.40 +1.2
960,422 - AO356_04225 0.40 -0.4
960,422 - AO356_04225 0.40 -1.2
960,422 - AO356_04225 0.40 +1.0
960,422 - AO356_04225 0.40 -1.3
960,493 + AO356_04225 0.52 -0.9
960,493 + AO356_04225 0.52 -0.6
960,494 - AO356_04225 0.52 -1.2
960,494 - AO356_04225 0.52 +0.4
960,494 - AO356_04225 0.52 +0.4
960,789 + -0.6
960,790 - -0.2
960,790 - +2.0
960,790 - +0.8

Or see this region's nucleotide sequence