Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02690 and AO356_02695 overlap by 26 nucleotides AO356_02695 and AO356_02700 are separated by 3 nucleotides AO356_02700 and AO356_02705 are separated by 8 nucleotides AO356_02705 and AO356_02710 overlap by 8 nucleotides
AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885
_02690
AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663
_02695
AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921
_02700
AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589
_02705
AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511
_02710
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.003 kb on - strand, within AO356_02690 at 591.544 kb on + strand, within AO356_02690 at 591.545 kb on - strand, within AO356_02690 at 591.671 kb on + strand, within AO356_02690 at 591.672 kb on - strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.975 kb on + strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.668 kb on + strand at 592.885 kb on - strand, within AO356_02700 at 592.885 kb on - strand, within AO356_02700 at 592.905 kb on + strand at 592.906 kb on - strand at 592.906 kb on - strand at 592.931 kb on + strand at 592.931 kb on + strand at 592.932 kb on - strand at 592.949 kb on + strand at 592.949 kb on + strand at 592.950 kb on - strand at 592.950 kb on - strand at 593.108 kb on + strand, within AO356_02705 at 593.108 kb on + strand, within AO356_02705 at 593.108 kb on + strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.109 kb on - strand, within AO356_02705 at 593.114 kb on + strand, within AO356_02705 at 593.114 kb on + strand, within AO356_02705 at 593.115 kb on - strand, within AO356_02705 at 593.156 kb on + strand, within AO356_02705 at 593.157 kb on - strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.276 kb on + strand, within AO356_02705 at 593.277 kb on - strand, within AO356_02705 at 593.277 kb on - strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.288 kb on + strand, within AO356_02705 at 593.289 kb on - strand, within AO356_02705 at 593.289 kb on - strand, within AO356_02705 at 593.297 kb on + strand, within AO356_02705 at 593.298 kb on - strand, within AO356_02705 at 593.347 kb on - strand, within AO356_02705 at 593.369 kb on + strand, within AO356_02705 at 593.370 kb on - strand, within AO356_02705 at 593.370 kb on - strand, within AO356_02705 at 593.372 kb on + strand, within AO356_02705 at 593.372 kb on + strand, within AO356_02705 at 593.513 kb on + strand, within AO356_02705 at 593.514 kb on - strand, within AO356_02705
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 591,003 - AO356_02690 0.15 +0.1 591,544 + AO356_02690 0.67 +1.0 591,545 - AO356_02690 0.67 +0.4 591,671 + AO356_02690 0.79 -0.2 591,672 - AO356_02690 0.79 -0.1 591,758 + AO356_02690 0.88 +0.1 591,758 + AO356_02690 0.88 -0.4 591,758 + AO356_02690 0.88 +1.5 591,758 + AO356_02690 0.88 -0.4 591,759 - AO356_02690 0.88 +1.0 591,759 - AO356_02690 0.88 +0.4 591,759 - AO356_02690 0.88 +0.1 591,759 - AO356_02690 0.88 +1.1 591,759 - AO356_02690 0.88 +0.4 591,759 - AO356_02690 0.88 +1.1 591,759 - AO356_02690 0.88 +1.4 591,975 + AO356_02695 0.14 -0.7 591,976 - AO356_02695 0.14 -0.5 591,976 - AO356_02695 0.14 +0.1 591,976 - AO356_02695 0.14 -0.6 592,203 + AO356_02695 0.43 -1.1 592,203 + AO356_02695 0.43 +0.4 592,494 + AO356_02695 0.79 -0.0 592,494 + AO356_02695 0.79 +0.7 592,668 + +1.7 592,885 - AO356_02700 0.85 -1.1 592,885 - AO356_02700 0.85 -0.5 592,905 + +0.4 592,906 - -0.1 592,906 - -2.9 592,931 + +0.1 592,931 + +2.0 592,932 - -0.2 592,949 + -0.6 592,949 + -0.2 592,950 - -0.0 592,950 - -0.0 593,108 + AO356_02705 0.27 -0.3 593,108 + AO356_02705 0.27 -0.1 593,108 + AO356_02705 0.27 -0.1 593,109 - AO356_02705 0.27 +0.6 593,109 - AO356_02705 0.27 +0.2 593,109 - AO356_02705 0.27 -0.9 593,109 - AO356_02705 0.27 -0.7 593,114 + AO356_02705 0.28 +1.4 593,114 + AO356_02705 0.28 -0.8 593,115 - AO356_02705 0.28 +1.1 593,156 + AO356_02705 0.34 -0.9 593,157 - AO356_02705 0.34 +1.2 593,276 + AO356_02705 0.52 +0.9 593,276 + AO356_02705 0.52 +0.4 593,276 + AO356_02705 0.52 +0.9 593,277 - AO356_02705 0.53 +0.4 593,277 - AO356_02705 0.53 -0.6 593,288 + AO356_02705 0.54 +0.2 593,288 + AO356_02705 0.54 +0.7 593,288 + AO356_02705 0.54 -0.6 593,289 - AO356_02705 0.54 -0.7 593,289 - AO356_02705 0.54 +1.2 593,297 + AO356_02705 0.56 +0.5 593,298 - AO356_02705 0.56 +1.5 593,347 - AO356_02705 0.63 -0.2 593,369 + AO356_02705 0.67 -1.4 593,370 - AO356_02705 0.67 +1.0 593,370 - AO356_02705 0.67 -0.7 593,372 + AO356_02705 0.67 -0.7 593,372 + AO356_02705 0.67 +2.6 593,513 + AO356_02705 0.88 -0.1 593,514 - AO356_02705 0.88 +0.8
Or see this region's nucleotide sequence