Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02335

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02330 and AO356_02335 are separated by 590 nucleotidesAO356_02335 and AO356_02340 are separated by 101 nucleotidesAO356_02340 and AO356_02345 are separated by 174 nucleotides AO356_02330: AO356_02330 - multifunctional fatty acid oxidation complex subunit alpha, at 503,519 to 505,666 _02330 AO356_02335: AO356_02335 - hypothetical protein, at 506,257 to 506,694 _02335 AO356_02340: AO356_02340 - universal stress protein UspA, at 506,796 to 507,236 _02340 AO356_02345: AO356_02345 - ABC transporter ATP-binding protein, at 507,411 to 509,327 _02345 Position (kb) 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 505.700 kb on - strandat 505.700 kb on - strandat 505.796 kb on + strandat 505.849 kb on + strandat 505.890 kb on + strandat 505.914 kb on + strandat 505.914 kb on + strandat 505.933 kb on + strandat 505.972 kb on + strandat 505.972 kb on + strandat 505.972 kb on + strandat 505.972 kb on + strandat 505.972 kb on + strandat 505.973 kb on - strandat 505.973 kb on - strandat 505.999 kb on + strandat 506.028 kb on + strandat 506.028 kb on + strandat 506.029 kb on - strandat 506.150 kb on - strandat 506.150 kb on - strandat 506.157 kb on + strandat 506.324 kb on + strand, within AO356_02335at 506.324 kb on + strand, within AO356_02335at 506.324 kb on + strand, within AO356_02335at 506.360 kb on + strand, within AO356_02335at 506.360 kb on + strand, within AO356_02335at 506.360 kb on + strand, within AO356_02335at 506.502 kb on - strand, within AO356_02335at 506.620 kb on + strand, within AO356_02335at 506.620 kb on + strand, within AO356_02335at 506.621 kb on - strand, within AO356_02335at 506.653 kb on + strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.694 kb on + strandat 506.694 kb on + strandat 506.695 kb on - strandat 506.695 kb on - strandat 506.700 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.799 kb on + strandat 506.799 kb on + strandat 506.800 kb on - strandat 506.800 kb on - strandat 506.802 kb on + strandat 506.802 kb on + strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 507.061 kb on - strand, within AO356_02340at 507.205 kb on + strandat 507.205 kb on + strandat 507.205 kb on + strandat 507.205 kb on + strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.214 kb on + strandat 507.214 kb on + strandat 507.214 kb on + strandat 507.215 kb on - strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.235 kb on - strandat 507.235 kb on - strandat 507.240 kb on + strandat 507.240 kb on + strandat 507.240 kb on + strandat 507.241 kb on - strandat 507.241 kb on - strandat 507.241 kb on - strandat 507.247 kb on - strandat 507.282 kb on - strandat 507.514 kb on + strandat 507.515 kb on - strandat 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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505,700 - -1.8
505,700 - -0.2
505,796 + -1.2
505,849 + +0.4
505,890 + +0.9
505,914 + +1.2
505,914 + -0.4
505,933 + +0.5
505,972 + -1.1
505,972 + -0.3
505,972 + -0.1
505,972 + -0.4
505,972 + -1.0
505,973 - -1.0
505,973 - +0.6
505,999 + +0.2
506,028 + -0.0
506,028 + -0.3
506,029 - +0.0
506,150 - -0.6
506,150 - +0.4
506,157 + -1.1
506,324 + AO356_02335 0.15 +0.2
506,324 + AO356_02335 0.15 -0.2
506,324 + AO356_02335 0.15 -2.6
506,360 + AO356_02335 0.24 -2.8
506,360 + AO356_02335 0.24 +1.2
506,360 + AO356_02335 0.24 -2.0
506,502 - AO356_02335 0.56 -0.2
506,620 + AO356_02335 0.83 -1.0
506,620 + AO356_02335 0.83 -1.0
506,621 - AO356_02335 0.83 -0.6
506,653 + -0.6
506,654 - -0.6
506,654 - +0.4
506,654 - -1.2
506,654 - +0.4
506,654 - +0.4
506,654 - -0.3
506,654 - -0.9
506,694 + +0.4
506,694 + -1.9
506,695 - +1.1
506,695 - +0.0
506,700 + -1.5
506,761 + -1.2
506,761 + -0.1
506,761 + +0.4
506,761 + +1.7
506,761 + +0.8
506,761 + -1.0
506,761 + -1.2
506,761 + -0.3
506,761 + +0.2
506,762 - +0.4
506,762 - -0.4
506,762 - +0.2
506,762 - -0.1
506,762 - -0.1
506,765 + +1.1
506,765 + -0.2
506,765 + +0.9
506,765 + -0.5
506,765 + +0.1
506,799 + +0.2
506,799 + +1.0
506,800 - -0.6
506,800 - +0.4
506,802 + +1.4
506,802 + +0.9
506,803 - +3.4
506,803 - -0.1
506,803 - +0.4
506,803 - +0.4
506,803 - +1.6
507,061 - AO356_02340 0.60 +0.2
507,205 + +0.9
507,205 + +0.4
507,205 + +0.4
507,205 + +0.0
507,206 - +0.2
507,206 - -0.1
507,206 - +0.5
507,206 - +2.1
507,214 + -0.2
507,214 + +1.1
507,214 + -0.5
507,215 - +2.2
507,234 + -0.9
507,234 + +0.5
507,234 + +0.9
507,234 + +1.4
507,235 - -1.0
507,235 - +0.1
507,240 + +0.4
507,240 + -1.3
507,240 + +0.9
507,241 - +0.5
507,241 - -0.6
507,241 - -1.6
507,247 - -0.5
507,282 - -1.0
507,514 + -0.1
507,515 - +0.1
507,613 + AO356_02345 0.11 +0.4
507,613 + AO356_02345 0.11 +2.2
507,613 + AO356_02345 0.11 +0.4
507,613 + AO356_02345 0.11 -0.5
507,614 - AO356_02345 0.11 -1.6
507,614 - AO356_02345 0.11 -0.0
507,614 - AO356_02345 0.11 +0.1

Or see this region's nucleotide sequence