Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01135

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01125 and AO356_01130 overlap by 4 nucleotidesAO356_01130 and AO356_01135 are separated by 292 nucleotidesAO356_01135 and AO356_01140 are separated by 376 nucleotides AO356_01125: AO356_01125 - ABC transporter permease, at 256,158 to 258,629 _01125 AO356_01130: AO356_01130 - ABC transporter ATP-binding protein, at 258,626 to 259,294 _01130 AO356_01135: AO356_01135 - sulfatase, at 259,587 to 261,284 _01135 AO356_01140: AO356_01140 - UDP-glucose 6-dehydrogenase, at 261,661 to 263,025 _01140 Position (kb) 259 260 261 262Strain fitness (log2 ratio) -1 0 1at 259.264 kb on - strandat 259.270 kb on + strandat 259.270 kb on + strandat 259.270 kb on + strandat 259.270 kb on + strandat 259.270 kb on + strandat 259.271 kb on - strandat 259.271 kb on - strandat 259.272 kb on + strandat 259.380 kb on + strandat 259.380 kb on + strandat 259.381 kb on - strandat 259.451 kb on + strandat 259.451 kb on + strandat 259.451 kb on + strandat 259.515 kb on + strandat 259.516 kb on - strandat 259.516 kb on - strandat 259.581 kb on - strandat 259.582 kb on + strandat 259.583 kb on - strandat 259.583 kb on - strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.649 kb on + strandat 259.804 kb on + strand, within AO356_01135at 259.805 kb on - strand, within AO356_01135at 259.805 kb on - strand, within AO356_01135at 259.805 kb on - strand, within AO356_01135at 259.934 kb on + strand, within AO356_01135at 259.934 kb on + strand, within AO356_01135at 259.984 kb on + strand, within AO356_01135at 259.984 kb on + strand, within AO356_01135at 259.985 kb on - strand, within AO356_01135at 259.985 kb on - strand, within AO356_01135at 260.069 kb on - strand, within AO356_01135at 260.173 kb on + strand, within AO356_01135at 260.173 kb on + strand, within AO356_01135at 260.174 kb on - strand, within AO356_01135at 260.174 kb on - strand, within AO356_01135at 260.195 kb on - strand, within AO356_01135at 260.407 kb on + strand, within AO356_01135at 260.408 kb on - strand, within AO356_01135at 260.476 kb on + strand, within AO356_01135at 260.476 kb on + strand, within AO356_01135at 260.476 kb on + strand, within AO356_01135at 260.476 kb on + strand, within AO356_01135at 260.476 kb on + strand, within AO356_01135at 260.477 kb on - strand, within AO356_01135at 260.477 kb on - strand, within AO356_01135at 260.477 kb on - strand, within AO356_01135at 260.564 kb on + strand, within AO356_01135at 260.629 kb on + strand, within AO356_01135at 260.630 kb on - strand, within AO356_01135at 260.630 kb on - strand, within AO356_01135at 260.630 kb on - strand, within AO356_01135at 260.744 kb on - strand, within AO356_01135at 260.744 kb on - strand, within AO356_01135at 260.776 kb on + strand, within AO356_01135at 260.776 kb on + strand, within AO356_01135at 260.777 kb on - strand, within AO356_01135at 260.777 kb on - strand, within AO356_01135at 260.872 kb on + strand, within AO356_01135at 260.873 kb on - strand, within AO356_01135at 261.002 kb on - strand, within AO356_01135at 261.034 kb on + strand, within AO356_01135at 261.034 kb on + strand, within AO356_01135at 261.034 kb on + strand, within AO356_01135at 261.035 kb on - strand, within AO356_01135at 261.035 kb on - strand, within AO356_01135at 261.035 kb on - strand, within AO356_01135at 261.035 kb on - strand, within AO356_01135at 261.035 kb on - strand, within AO356_01135at 261.055 kb on + strand, within AO356_01135at 261.055 kb on + strand, within AO356_01135at 261.056 kb on - strand, within AO356_01135at 261.056 kb on - strand, within AO356_01135at 261.123 kb on + strandat 261.123 kb on + strandat 261.123 kb on + strandat 261.124 kb on - strandat 261.124 kb on - strandat 261.124 kb on - strandat 261.127 kb on + strandat 261.127 kb on + strandat 261.127 kb on + strandat 261.127 kb on + strandat 261.127 kb on + strandat 261.224 kb on - strandat 261.226 kb on + strandat 261.226 kb on + strandat 261.226 kb on + strandat 261.226 kb on + strandat 261.227 kb on - strandat 261.232 kb on + strandat 261.335 kb on - strandat 261.466 kb on + strandat 261.611 kb on + strandat 261.631 kb on - strandat 261.631 kb on - strandat 261.674 kb on + strandat 261.674 kb on + strandat 261.674 kb on + strandat 261.674 kb on + strandat 261.674 kb on + strandat 261.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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259,264 - +1.1
259,270 + -1.7
259,270 + -0.8
259,270 + -0.1
259,270 + +0.1
259,270 + -0.5
259,271 - +0.9
259,271 - -0.5
259,272 + -0.3
259,380 + -0.8
259,380 + +0.7
259,381 - +0.1
259,451 + -1.3
259,451 + +1.2
259,451 + +0.3
259,515 + +0.3
259,516 - +0.1
259,516 - -0.4
259,581 - -1.1
259,582 + -0.1
259,583 - +0.2
259,583 - -0.1
259,649 + -0.5
259,649 + +0.9
259,649 + +0.8
259,649 + -0.5
259,649 + -0.1
259,804 + AO356_01135 0.13 -0.4
259,805 - AO356_01135 0.13 +0.8
259,805 - AO356_01135 0.13 +0.3
259,805 - AO356_01135 0.13 +0.5
259,934 + AO356_01135 0.20 +0.2
259,934 + AO356_01135 0.20 +0.7
259,984 + AO356_01135 0.23 +0.3
259,984 + AO356_01135 0.23 +0.3
259,985 - AO356_01135 0.23 +0.2
259,985 - AO356_01135 0.23 +0.3
260,069 - AO356_01135 0.28 -0.5
260,173 + AO356_01135 0.35 +1.3
260,173 + AO356_01135 0.35 +0.6
260,174 - AO356_01135 0.35 -1.0
260,174 - AO356_01135 0.35 +0.7
260,195 - AO356_01135 0.36 +1.3
260,407 + AO356_01135 0.48 +1.5
260,408 - AO356_01135 0.48 -0.4
260,476 + AO356_01135 0.52 +0.1
260,476 + AO356_01135 0.52 -0.5
260,476 + AO356_01135 0.52 +0.3
260,476 + AO356_01135 0.52 -0.8
260,476 + AO356_01135 0.52 +0.8
260,477 - AO356_01135 0.52 -1.3
260,477 - AO356_01135 0.52 +0.1
260,477 - AO356_01135 0.52 +1.1
260,564 + AO356_01135 0.58 +0.3
260,629 + AO356_01135 0.61 -0.3
260,630 - AO356_01135 0.61 +0.5
260,630 - AO356_01135 0.61 -0.8
260,630 - AO356_01135 0.61 +0.6
260,744 - AO356_01135 0.68 -0.1
260,744 - AO356_01135 0.68 +0.6
260,776 + AO356_01135 0.70 -0.0
260,776 + AO356_01135 0.70 -0.0
260,777 - AO356_01135 0.70 +0.1
260,777 - AO356_01135 0.70 +0.3
260,872 + AO356_01135 0.76 +0.3
260,873 - AO356_01135 0.76 +0.8
261,002 - AO356_01135 0.83 -0.1
261,034 + AO356_01135 0.85 +1.6
261,034 + AO356_01135 0.85 +0.3
261,034 + AO356_01135 0.85 +0.2
261,035 - AO356_01135 0.85 +0.6
261,035 - AO356_01135 0.85 +0.9
261,035 - AO356_01135 0.85 +0.2
261,035 - AO356_01135 0.85 -0.3
261,035 - AO356_01135 0.85 -1.7
261,055 + AO356_01135 0.86 +0.3
261,055 + AO356_01135 0.86 -0.7
261,056 - AO356_01135 0.87 +0.3
261,056 - AO356_01135 0.87 +0.8
261,123 + +0.6
261,123 + +0.7
261,123 + -0.6
261,124 - -0.7
261,124 - -0.9
261,124 - +0.2
261,127 + -0.7
261,127 + -1.7
261,127 + +1.1
261,127 + +0.3
261,127 + +0.2
261,224 - +0.5
261,226 + -0.3
261,226 + -0.0
261,226 + +0.0
261,226 + -0.7
261,227 - +0.9
261,232 + -0.9
261,335 - +1.1
261,466 + -1.7
261,611 + -1.3
261,631 - -0.3
261,631 - -0.0
261,674 + -0.2
261,674 + +0.2
261,674 + +0.5
261,674 + -0.4
261,674 + -0.2
261,689 - +0.5

Or see this region's nucleotide sequence