Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22825

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22820 and ABZR87_RS22825 are separated by 27 nucleotidesABZR87_RS22825 and ABZR87_RS22830 overlap by 4 nucleotidesABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotides ABZR87_RS22820: ABZR87_RS22820 - alkaline phosphatase D family protein, at 1,481,634 to 1,483,259 _RS22820 ABZR87_RS22825: ABZR87_RS22825 - 2-dehydropantoate 2-reductase, at 1,483,287 to 1,484,300 _RS22825 ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986 _RS22830 ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378 _RS22835 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -1 0 1at 1482.331 kb on - strand, within ABZR87_RS22820at 1482.348 kb on + strand, within ABZR87_RS22820at 1482.349 kb on - strand, within ABZR87_RS22820at 1482.378 kb on + strand, within ABZR87_RS22820at 1482.379 kb on - strand, within ABZR87_RS22820at 1482.456 kb on + strand, within ABZR87_RS22820at 1482.456 kb on + strand, within ABZR87_RS22820at 1482.463 kb on + strand, within ABZR87_RS22820at 1482.493 kb on - strand, within ABZR87_RS22820at 1482.495 kb on + strand, within ABZR87_RS22820at 1482.624 kb on + strand, within ABZR87_RS22820at 1482.625 kb on - strand, within ABZR87_RS22820at 1482.625 kb on - strand, within ABZR87_RS22820at 1482.763 kb on - strand, within ABZR87_RS22820at 1482.763 kb on - strand, within ABZR87_RS22820at 1483.133 kb on + strandat 1483.134 kb on - strandat 1483.134 kb on - strandat 1483.134 kb on - strandat 1483.236 kb on + strandat 1483.236 kb on + strandat 1483.236 kb on + strandat 1483.237 kb on - strandat 1483.237 kb on - strandat 1483.329 kb on + strandat 1483.330 kb on - strandat 1483.330 kb on - strandat 1483.330 kb on - strandat 1483.432 kb on - strand, within ABZR87_RS22825at 1483.473 kb on + strand, within ABZR87_RS22825at 1483.473 kb on + strand, within ABZR87_RS22825at 1483.473 kb on + strand, within ABZR87_RS22825at 1483.473 kb on + strand, within ABZR87_RS22825at 1483.474 kb on - strand, within ABZR87_RS22825at 1483.474 kb on - strand, within ABZR87_RS22825at 1483.474 kb on - strand, within ABZR87_RS22825at 1484.298 kb on + strandat 1484.361 kb on + strandat 1484.361 kb on + strandat 1484.577 kb on + strand, within ABZR87_RS22830at 1484.577 kb on + strand, within ABZR87_RS22830at 1485.047 kb on + strand, within ABZR87_RS22835at 1485.047 kb on + strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.050 kb on - strand, within ABZR87_RS22835at 1485.261 kb on - strand, within ABZR87_RS22835

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,482,331 - ABZR87_RS22820 0.43 -0.2
1,482,348 + ABZR87_RS22820 0.44 +0.2
1,482,349 - ABZR87_RS22820 0.44 +0.0
1,482,378 + ABZR87_RS22820 0.46 -0.4
1,482,379 - ABZR87_RS22820 0.46 -0.2
1,482,456 + ABZR87_RS22820 0.51 +0.6
1,482,456 + ABZR87_RS22820 0.51 -0.1
1,482,463 + ABZR87_RS22820 0.51 +0.6
1,482,493 - ABZR87_RS22820 0.53 -1.1
1,482,495 + ABZR87_RS22820 0.53 -0.2
1,482,624 + ABZR87_RS22820 0.61 -0.8
1,482,625 - ABZR87_RS22820 0.61 -0.7
1,482,625 - ABZR87_RS22820 0.61 -0.1
1,482,763 - ABZR87_RS22820 0.69 +0.3
1,482,763 - ABZR87_RS22820 0.69 +0.3
1,483,133 + +0.1
1,483,134 - +0.2
1,483,134 - +0.5
1,483,134 - -0.1
1,483,236 + -0.3
1,483,236 + +0.1
1,483,236 + +0.2
1,483,237 - +1.0
1,483,237 - -0.1
1,483,329 + -1.0
1,483,330 - -0.2
1,483,330 - -0.5
1,483,330 - -0.4
1,483,432 - ABZR87_RS22825 0.14 -0.3
1,483,473 + ABZR87_RS22825 0.18 +0.2
1,483,473 + ABZR87_RS22825 0.18 -0.2
1,483,473 + ABZR87_RS22825 0.18 -0.4
1,483,473 + ABZR87_RS22825 0.18 -0.1
1,483,474 - ABZR87_RS22825 0.18 -1.2
1,483,474 - ABZR87_RS22825 0.18 -1.0
1,483,474 - ABZR87_RS22825 0.18 -1.1
1,484,298 + +0.5
1,484,361 + +0.4
1,484,361 + +0.2
1,484,577 + ABZR87_RS22830 0.41 -0.3
1,484,577 + ABZR87_RS22830 0.41 +0.5
1,485,047 + ABZR87_RS22835 0.16 -0.9
1,485,047 + ABZR87_RS22835 0.16 -0.2
1,485,048 - ABZR87_RS22835 0.16 +0.0
1,485,048 - ABZR87_RS22835 0.16 -0.9
1,485,048 - ABZR87_RS22835 0.16 -0.7
1,485,050 - ABZR87_RS22835 0.16 +1.7
1,485,261 - ABZR87_RS22835 0.70 -0.2

Or see this region's nucleotide sequence