Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12750

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS12745 and ABZR87_RS12750 are separated by 9 nucleotidesABZR87_RS12750 and ABZR87_RS12755 are separated by 73 nucleotidesABZR87_RS12755 and ABZR87_RS12760 are separated by 81 nucleotides ABZR87_RS12745: ABZR87_RS12745 - glucose-6-phosphate isomerase, at 2,708,664 to 2,710,283 _RS12745 ABZR87_RS12750: ABZR87_RS12750 - ABC transporter ATP-binding protein, at 2,710,293 to 2,711,003 _RS12750 ABZR87_RS12755: ABZR87_RS12755 - arylesterase, at 2,711,077 to 2,711,685 _RS12755 ABZR87_RS12760: ABZR87_RS12760 - signal peptidase I, at 2,711,767 to 2,712,459 _RS12760 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -2 -1 0 1at 2710.495 kb on - strand, within ABZR87_RS12750at 2710.568 kb on - strand, within ABZR87_RS12750at 2710.925 kb on + strand, within ABZR87_RS12750at 2710.925 kb on + strand, within ABZR87_RS12750at 2710.926 kb on - strand, within ABZR87_RS12750at 2710.988 kb on + strandat 2710.988 kb on + strandat 2710.989 kb on - strandat 2710.989 kb on - strandat 2711.022 kb on + strandat 2711.022 kb on + strandat 2711.023 kb on - strandat 2711.023 kb on - strandat 2711.234 kb on - strand, within ABZR87_RS12755at 2711.235 kb on + strand, within ABZR87_RS12755at 2711.236 kb on - strand, within ABZR87_RS12755at 2711.467 kb on + strand, within ABZR87_RS12755at 2711.467 kb on + strand, within ABZR87_RS12755at 2711.468 kb on - strand, within ABZR87_RS12755at 2711.468 kb on - strand, within ABZR87_RS12755at 2711.480 kb on - strand, within ABZR87_RS12755at 2711.524 kb on + strand, within ABZR87_RS12755at 2711.525 kb on - strand, within ABZR87_RS12755at 2711.639 kb on + strandat 2711.639 kb on + strandat 2711.639 kb on + strandat 2711.639 kb on + strandat 2711.639 kb on + strandat 2711.640 kb on - strandat 2711.640 kb on - strandat 2711.640 kb on - strandat 2711.665 kb on - strandat 2711.917 kb on + strand, within ABZR87_RS12760at 2711.917 kb on + strand, within ABZR87_RS12760at 2711.917 kb on + strand, within ABZR87_RS12760at 2711.949 kb on - strand, within ABZR87_RS12760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
2,710,495 - ABZR87_RS12750 0.28 -0.5
2,710,568 - ABZR87_RS12750 0.39 -1.8
2,710,925 + ABZR87_RS12750 0.89 -0.4
2,710,925 + ABZR87_RS12750 0.89 -0.3
2,710,926 - ABZR87_RS12750 0.89 +1.1
2,710,988 + +0.1
2,710,988 + +0.0
2,710,989 - +0.2
2,710,989 - +0.4
2,711,022 + -1.2
2,711,022 + -0.3
2,711,023 - +0.5
2,711,023 - +0.4
2,711,234 - ABZR87_RS12755 0.26 -0.0
2,711,235 + ABZR87_RS12755 0.26 -1.3
2,711,236 - ABZR87_RS12755 0.26 +0.7
2,711,467 + ABZR87_RS12755 0.64 -0.7
2,711,467 + ABZR87_RS12755 0.64 +0.3
2,711,468 - ABZR87_RS12755 0.64 +0.7
2,711,468 - ABZR87_RS12755 0.64 +0.6
2,711,480 - ABZR87_RS12755 0.66 +0.2
2,711,524 + ABZR87_RS12755 0.73 -0.7
2,711,525 - ABZR87_RS12755 0.74 -0.6
2,711,639 + -0.7
2,711,639 + +0.2
2,711,639 + +0.5
2,711,639 + +0.3
2,711,639 + +0.7
2,711,640 - -0.7
2,711,640 - -0.3
2,711,640 - -0.1
2,711,665 - +0.1
2,711,917 + ABZR87_RS12760 0.22 -1.8
2,711,917 + ABZR87_RS12760 0.22 +0.4
2,711,917 + ABZR87_RS12760 0.22 +0.4
2,711,949 - ABZR87_RS12760 0.26 -0.4

Or see this region's nucleotide sequence