Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04920

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04915 and ABZR87_RS04920 are separated by 16 nucleotidesABZR87_RS04920 and ABZR87_RS04925 are separated by 178 nucleotidesABZR87_RS04925 and ABZR87_RS04930 are separated by 287 nucleotidesABZR87_RS04930 and ABZR87_RS04935 are separated by 67 nucleotides ABZR87_RS04915: ABZR87_RS04915 - aspartate aminotransferase family protein, at 1,031,213 to 1,032,568 _RS04915 ABZR87_RS04920: ABZR87_RS04920 - MurR/RpiR family transcriptional regulator, at 1,032,585 to 1,033,493 _RS04920 ABZR87_RS04925: ABZR87_RS04925 - hypothetical protein, at 1,033,672 to 1,033,977 _RS04925 ABZR87_RS04930: ABZR87_RS04930 - tRNA-Phe, at 1,034,265 to 1,034,340 _RS04930 ABZR87_RS04935: ABZR87_RS04935 - response regulator, at 1,034,408 to 1,035,121 _RS04935 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -1 0 1at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.646 kb on + strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.647 kb on - strand, within ABZR87_RS04915at 1031.806 kb on - strand, within ABZR87_RS04915at 1031.892 kb on + strand, within ABZR87_RS04915at 1031.892 kb on + strand, within ABZR87_RS04915at 1031.892 kb on + strand, within ABZR87_RS04915at 1031.892 kb on + strand, within ABZR87_RS04915at 1031.893 kb on - strand, within ABZR87_RS04915at 1031.893 kb on - strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.018 kb on + strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.019 kb on - strand, within ABZR87_RS04915at 1032.055 kb on - strand, within ABZR87_RS04915at 1032.060 kb on + strand, within ABZR87_RS04915at 1032.060 kb on + strand, within ABZR87_RS04915at 1032.060 kb on + strand, within ABZR87_RS04915at 1032.060 kb on + strand, within ABZR87_RS04915at 1032.060 kb on + strand, within ABZR87_RS04915at 1032.061 kb on - strand, within ABZR87_RS04915at 1032.061 kb on - strand, within ABZR87_RS04915at 1032.061 kb on - strand, within ABZR87_RS04915at 1032.162 kb on + strand, within ABZR87_RS04915at 1032.162 kb on + strand, within ABZR87_RS04915at 1032.162 kb on + strand, within ABZR87_RS04915at 1032.163 kb on - strand, within ABZR87_RS04915at 1032.163 kb on - strand, within ABZR87_RS04915at 1032.163 kb on - strand, within ABZR87_RS04915at 1032.187 kb on - strand, within ABZR87_RS04915at 1032.187 kb on - strand, within ABZR87_RS04915at 1032.187 kb on - strand, within ABZR87_RS04915at 1032.219 kb on + strand, within ABZR87_RS04915at 1032.219 kb on + strand, within ABZR87_RS04915at 1032.220 kb on - strand, within ABZR87_RS04915at 1032.220 kb on - strand, within ABZR87_RS04915at 1032.220 kb on - strand, within ABZR87_RS04915at 1032.276 kb on + strand, within ABZR87_RS04915at 1032.276 kb on + strand, within ABZR87_RS04915at 1032.276 kb on + strand, within ABZR87_RS04915at 1032.276 kb on + strand, within ABZR87_RS04915at 1032.276 kb on + strand, within ABZR87_RS04915at 1032.277 kb on - strand, within ABZR87_RS04915at 1032.277 kb on - strand, within ABZR87_RS04915at 1032.277 kb on - strand, within ABZR87_RS04915at 1032.278 kb on + strand, within ABZR87_RS04915at 1032.278 kb on + strand, within ABZR87_RS04915at 1032.278 kb on + strand, within ABZR87_RS04915at 1032.278 kb on + strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.279 kb on - strand, within ABZR87_RS04915at 1032.367 kb on - strand, within ABZR87_RS04915at 1032.462 kb on + strandat 1032.643 kb on + strandat 1032.643 kb on + strandat 1032.643 kb on + strandat 1032.643 kb on + strandat 1032.644 kb on - strandat 1032.644 kb on - strandat 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.850 kb on + strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.851 kb on - strand, within ABZR87_RS04920at 1032.853 kb on - strand, within ABZR87_RS04920at 1032.880 kb on + strand, within ABZR87_RS04920at 1032.881 kb on - strand, within ABZR87_RS04920at 1032.881 kb on - strand, within ABZR87_RS04920at 1032.910 kb on + strand, within ABZR87_RS04920at 1032.910 kb on + strand, within ABZR87_RS04920at 1033.030 kb on + strand, within ABZR87_RS04920at 1033.031 kb on - strand, within ABZR87_RS04920at 1033.242 kb on - strand, within ABZR87_RS04920at 1033.618 kb on + strandat 1033.618 kb on + strandat 1033.619 kb on - strandat 1033.619 kb on - strandat 1033.784 kb on - strand, within ABZR87_RS04925at 1033.986 kb on + strandat 1034.006 kb on + strandat 1034.007 kb on - strandat 1034.007 kb on - strandat 1034.019 kb on + strandat 1034.020 kb on + strandat 1034.020 kb on + strandat 1034.020 kb on + strandat 1034.020 kb on + strandat 1034.020 kb on + strandat 1034.020 kb on + strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.021 kb on - strandat 1034.022 kb on + strandat 1034.022 kb on + strandat 1034.023 kb on - strandat 1034.023 kb on - strandat 1034.023 kb on - strandat 1034.072 kb on - strandat 1034.072 kb on - strandat 1034.072 kb on - strandat 1034.237 kb on + strandat 1034.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,031,646 + ABZR87_RS04915 0.32 +0.6
1,031,646 + ABZR87_RS04915 0.32 +1.0
1,031,646 + ABZR87_RS04915 0.32 +1.1
1,031,646 + ABZR87_RS04915 0.32 -0.4
1,031,646 + ABZR87_RS04915 0.32 -0.4
1,031,646 + ABZR87_RS04915 0.32 -0.0
1,031,647 - ABZR87_RS04915 0.32 +0.2
1,031,647 - ABZR87_RS04915 0.32 +0.3
1,031,647 - ABZR87_RS04915 0.32 +0.3
1,031,647 - ABZR87_RS04915 0.32 -0.5
1,031,647 - ABZR87_RS04915 0.32 +0.1
1,031,647 - ABZR87_RS04915 0.32 -0.1
1,031,647 - ABZR87_RS04915 0.32 +0.0
1,031,806 - ABZR87_RS04915 0.44 +0.4
1,031,892 + ABZR87_RS04915 0.50 -0.3
1,031,892 + ABZR87_RS04915 0.50 -0.9
1,031,892 + ABZR87_RS04915 0.50 +0.2
1,031,892 + ABZR87_RS04915 0.50 +0.1
1,031,893 - ABZR87_RS04915 0.50 +0.1
1,031,893 - ABZR87_RS04915 0.50 -0.3
1,032,018 + ABZR87_RS04915 0.59 -0.2
1,032,018 + ABZR87_RS04915 0.59 +0.6
1,032,018 + ABZR87_RS04915 0.59 +0.7
1,032,018 + ABZR87_RS04915 0.59 +1.1
1,032,018 + ABZR87_RS04915 0.59 +0.6
1,032,018 + ABZR87_RS04915 0.59 -0.1
1,032,018 + ABZR87_RS04915 0.59 -0.4
1,032,018 + ABZR87_RS04915 0.59 +0.4
1,032,018 + ABZR87_RS04915 0.59 -0.3
1,032,018 + ABZR87_RS04915 0.59 +0.4
1,032,019 - ABZR87_RS04915 0.59 +0.2
1,032,019 - ABZR87_RS04915 0.59 -0.1
1,032,019 - ABZR87_RS04915 0.59 +0.3
1,032,019 - ABZR87_RS04915 0.59 -0.7
1,032,019 - ABZR87_RS04915 0.59 -0.5
1,032,019 - ABZR87_RS04915 0.59 +0.1
1,032,019 - ABZR87_RS04915 0.59 +0.4
1,032,055 - ABZR87_RS04915 0.62 -0.4
1,032,060 + ABZR87_RS04915 0.62 -0.1
1,032,060 + ABZR87_RS04915 0.62 -0.4
1,032,060 + ABZR87_RS04915 0.62 -0.4
1,032,060 + ABZR87_RS04915 0.62 -0.4
1,032,060 + ABZR87_RS04915 0.62 +0.2
1,032,061 - ABZR87_RS04915 0.63 +0.2
1,032,061 - ABZR87_RS04915 0.63 +1.6
1,032,061 - ABZR87_RS04915 0.63 -0.5
1,032,162 + ABZR87_RS04915 0.70 -0.5
1,032,162 + ABZR87_RS04915 0.70 +0.3
1,032,162 + ABZR87_RS04915 0.70 -0.2
1,032,163 - ABZR87_RS04915 0.70 +0.4
1,032,163 - ABZR87_RS04915 0.70 -1.1
1,032,163 - ABZR87_RS04915 0.70 -0.4
1,032,187 - ABZR87_RS04915 0.72 +0.4
1,032,187 - ABZR87_RS04915 0.72 +0.3
1,032,187 - ABZR87_RS04915 0.72 -0.7
1,032,219 + ABZR87_RS04915 0.74 -0.4
1,032,219 + ABZR87_RS04915 0.74 +0.4
1,032,220 - ABZR87_RS04915 0.74 -0.6
1,032,220 - ABZR87_RS04915 0.74 -0.3
1,032,220 - ABZR87_RS04915 0.74 +1.2
1,032,276 + ABZR87_RS04915 0.78 -0.0
1,032,276 + ABZR87_RS04915 0.78 -0.5
1,032,276 + ABZR87_RS04915 0.78 +0.1
1,032,276 + ABZR87_RS04915 0.78 -0.4
1,032,276 + ABZR87_RS04915 0.78 +0.3
1,032,277 - ABZR87_RS04915 0.78 -0.2
1,032,277 - ABZR87_RS04915 0.78 +0.9
1,032,277 - ABZR87_RS04915 0.78 -0.3
1,032,278 + ABZR87_RS04915 0.79 -0.1
1,032,278 + ABZR87_RS04915 0.79 +0.4
1,032,278 + ABZR87_RS04915 0.79 +0.8
1,032,278 + ABZR87_RS04915 0.79 -0.0
1,032,279 - ABZR87_RS04915 0.79 +0.3
1,032,279 - ABZR87_RS04915 0.79 -0.3
1,032,279 - ABZR87_RS04915 0.79 -0.0
1,032,279 - ABZR87_RS04915 0.79 -0.9
1,032,279 - ABZR87_RS04915 0.79 -0.3
1,032,279 - ABZR87_RS04915 0.79 -0.3
1,032,279 - ABZR87_RS04915 0.79 -1.7
1,032,279 - ABZR87_RS04915 0.79 -0.1
1,032,279 - ABZR87_RS04915 0.79 -1.1
1,032,367 - ABZR87_RS04915 0.85 +0.1
1,032,462 + +0.1
1,032,643 + +0.1
1,032,643 + -0.2
1,032,643 + -0.0
1,032,643 + +0.3
1,032,644 - +0.6
1,032,644 - +0.8
1,032,850 + ABZR87_RS04920 0.29 +0.6
1,032,850 + ABZR87_RS04920 0.29 -0.3
1,032,850 + ABZR87_RS04920 0.29 +0.3
1,032,850 + ABZR87_RS04920 0.29 -0.0
1,032,850 + ABZR87_RS04920 0.29 +1.3
1,032,850 + ABZR87_RS04920 0.29 -0.3
1,032,850 + ABZR87_RS04920 0.29 +1.6
1,032,850 + ABZR87_RS04920 0.29 +1.1
1,032,850 + ABZR87_RS04920 0.29 -0.4
1,032,851 - ABZR87_RS04920 0.29 +1.5
1,032,851 - ABZR87_RS04920 0.29 +1.0
1,032,851 - ABZR87_RS04920 0.29 +0.5
1,032,851 - ABZR87_RS04920 0.29 -0.7
1,032,851 - ABZR87_RS04920 0.29 +0.4
1,032,851 - ABZR87_RS04920 0.29 +1.7
1,032,851 - ABZR87_RS04920 0.29 +0.5
1,032,851 - ABZR87_RS04920 0.29 +0.8
1,032,851 - ABZR87_RS04920 0.29 +0.1
1,032,853 - ABZR87_RS04920 0.29 +0.9
1,032,880 + ABZR87_RS04920 0.32 -0.6
1,032,881 - ABZR87_RS04920 0.33 +1.0
1,032,881 - ABZR87_RS04920 0.33 +1.2
1,032,910 + ABZR87_RS04920 0.36 +1.2
1,032,910 + ABZR87_RS04920 0.36 +0.5
1,033,030 + ABZR87_RS04920 0.49 +0.5
1,033,031 - ABZR87_RS04920 0.49 +0.4
1,033,242 - ABZR87_RS04920 0.72 -0.5
1,033,618 + +0.3
1,033,618 + +0.4
1,033,619 - +0.9
1,033,619 - +0.9
1,033,784 - ABZR87_RS04925 0.37 -0.8
1,033,986 + +0.1
1,034,006 + +0.5
1,034,007 - -0.3
1,034,007 - -0.4
1,034,019 + -0.3
1,034,020 + +1.5
1,034,020 + +0.2
1,034,020 + +0.8
1,034,020 + -0.5
1,034,020 + -0.1
1,034,020 + +0.1
1,034,021 - -0.3
1,034,021 - -0.4
1,034,021 - +0.3
1,034,021 - +0.1
1,034,021 - +0.6
1,034,021 - +0.9
1,034,021 - +0.1
1,034,022 + +0.3
1,034,022 + +0.2
1,034,023 - +0.9
1,034,023 - +0.2
1,034,023 - -0.8
1,034,072 - -0.2
1,034,072 - +0.2
1,034,072 - +1.1
1,034,237 + -0.6
1,034,244 - +0.3

Or see this region's nucleotide sequence