Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04715

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04705 and ABZR87_RS04710 are separated by 2 nucleotidesABZR87_RS04710 and ABZR87_RS04715 are separated by 20 nucleotidesABZR87_RS04715 and ABZR87_RS04720 are separated by 195 nucleotides ABZR87_RS04705: ABZR87_RS04705 - amino acid ABC transporter ATP-binding protein, at 982,178 to 982,939 _RS04705 ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613 _RS04710 ABZR87_RS04715: ABZR87_RS04715 - ABC transporter substrate-binding protein, at 983,634 to 984,398 _RS04715 ABZR87_RS04720: ABZR87_RS04720 - IclR family transcriptional regulator, at 984,594 to 985,391 _RS04720 Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1 2at 982.782 kb on + strand, within ABZR87_RS04705at 982.782 kb on + strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 983.021 kb on + strand, within ABZR87_RS04710at 983.021 kb on + strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.043 kb on - strand, within ABZR87_RS04710at 983.162 kb on + strand, within ABZR87_RS04710at 983.163 kb on - strand, within ABZR87_RS04710at 983.303 kb on + strand, within ABZR87_RS04710at 983.312 kb on + strand, within ABZR87_RS04710at 983.312 kb on + strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.455 kb on + strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.774 kb on - strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.008 kb on - strand, within ABZR87_RS04715at 984.008 kb on - strand, within ABZR87_RS04715at 984.055 kb on + strand, within ABZR87_RS04715at 984.055 kb on + strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.495 kb on + strandat 984.510 kb on + strandat 984.510 kb on + strandat 984.511 kb on - strandat 984.515 kb on - strandat 984.528 kb on - strandat 984.536 kb on + strandat 984.536 kb on + strandat 984.536 kb on + strandat 984.537 kb on - strandat 984.538 kb on + strandat 984.538 kb on + strandat 984.539 kb on - strandat 984.762 kb on + strand, within ABZR87_RS04720at 984.762 kb on + strand, within ABZR87_RS04720at 984.762 kb on + strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.784 kb on - strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.188 kb on + strand, within ABZR87_RS04720at 985.189 kb on - strand, within ABZR87_RS04720at 985.250 kb on + strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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982,782 + ABZR87_RS04705 0.79 +1.5
982,782 + ABZR87_RS04705 0.79 +0.4
982,783 - ABZR87_RS04705 0.79 -0.5
982,783 - ABZR87_RS04705 0.79 -0.4
982,783 - ABZR87_RS04705 0.79 -0.6
982,783 - ABZR87_RS04705 0.79 +0.7
982,783 - ABZR87_RS04705 0.79 +0.0
982,783 - ABZR87_RS04705 0.79 -0.6
983,021 + ABZR87_RS04710 0.12 +0.5
983,021 + ABZR87_RS04710 0.12 -0.9
983,022 - ABZR87_RS04710 0.12 -1.1
983,022 - ABZR87_RS04710 0.12 +0.5
983,042 + ABZR87_RS04710 0.15 -0.3
983,042 + ABZR87_RS04710 0.15 +1.0
983,042 + ABZR87_RS04710 0.15 +0.3
983,043 - ABZR87_RS04710 0.15 -1.0
983,162 + ABZR87_RS04710 0.33 -0.2
983,163 - ABZR87_RS04710 0.33 -0.8
983,303 + ABZR87_RS04710 0.54 +0.0
983,312 + ABZR87_RS04710 0.55 -0.7
983,312 + ABZR87_RS04710 0.55 -0.0
983,313 - ABZR87_RS04710 0.55 +0.3
983,313 - ABZR87_RS04710 0.55 -0.4
983,313 - ABZR87_RS04710 0.55 -0.5
983,313 - ABZR87_RS04710 0.55 -0.5
983,384 + ABZR87_RS04710 0.66 +0.5
983,384 + ABZR87_RS04710 0.66 -0.6
983,384 + ABZR87_RS04710 0.66 +0.4
983,384 + ABZR87_RS04710 0.66 +0.3
983,384 + ABZR87_RS04710 0.66 -1.2
983,384 + ABZR87_RS04710 0.66 -0.6
983,384 + ABZR87_RS04710 0.66 +0.3
983,384 + ABZR87_RS04710 0.66 -1.3
983,385 - ABZR87_RS04710 0.66 -0.1
983,385 - ABZR87_RS04710 0.66 +0.1
983,385 - ABZR87_RS04710 0.66 -0.4
983,385 - ABZR87_RS04710 0.66 -1.7
983,385 - ABZR87_RS04710 0.66 +0.5
983,385 - ABZR87_RS04710 0.66 -0.1
983,385 - ABZR87_RS04710 0.66 -0.4
983,385 - ABZR87_RS04710 0.66 -1.3
983,390 + ABZR87_RS04710 0.67 +0.1
983,390 + ABZR87_RS04710 0.67 +0.2
983,390 + ABZR87_RS04710 0.67 -0.2
983,390 + ABZR87_RS04710 0.67 +0.1
983,390 + ABZR87_RS04710 0.67 +1.0
983,390 + ABZR87_RS04710 0.67 +0.2
983,390 + ABZR87_RS04710 0.67 +0.4
983,390 + ABZR87_RS04710 0.67 -0.2
983,390 + ABZR87_RS04710 0.67 +0.4
983,390 + ABZR87_RS04710 0.67 +0.3
983,390 + ABZR87_RS04710 0.67 -0.2
983,391 - ABZR87_RS04710 0.67 +0.1
983,391 - ABZR87_RS04710 0.67 -1.9
983,391 - ABZR87_RS04710 0.67 +0.2
983,391 - ABZR87_RS04710 0.67 +0.4
983,391 - ABZR87_RS04710 0.67 -0.2
983,391 - ABZR87_RS04710 0.67 +0.1
983,391 - ABZR87_RS04710 0.67 -0.2
983,455 + ABZR87_RS04710 0.76 +0.4
983,456 - ABZR87_RS04710 0.76 -0.1
983,456 - ABZR87_RS04710 0.76 +0.1
983,456 - ABZR87_RS04710 0.76 +0.4
983,456 - ABZR87_RS04710 0.76 +0.1
983,774 - ABZR87_RS04715 0.18 -0.4
983,902 + ABZR87_RS04715 0.35 +0.7
983,902 + ABZR87_RS04715 0.35 +0.8
983,902 + ABZR87_RS04715 0.35 -0.8
983,902 + ABZR87_RS04715 0.35 -0.8
983,902 + ABZR87_RS04715 0.35 +0.3
983,903 - ABZR87_RS04715 0.35 +0.0
983,903 - ABZR87_RS04715 0.35 -0.3
983,903 - ABZR87_RS04715 0.35 -0.7
983,903 - ABZR87_RS04715 0.35 +0.9
983,903 - ABZR87_RS04715 0.35 +0.1
983,906 + ABZR87_RS04715 0.36 -0.1
983,906 + ABZR87_RS04715 0.36 +1.0
983,906 + ABZR87_RS04715 0.36 -0.1
983,906 + ABZR87_RS04715 0.36 -0.7
983,906 + ABZR87_RS04715 0.36 +0.7
983,906 + ABZR87_RS04715 0.36 -0.4
983,907 - ABZR87_RS04715 0.36 +0.7
983,907 - ABZR87_RS04715 0.36 -0.4
983,907 - ABZR87_RS04715 0.36 +0.2
983,907 - ABZR87_RS04715 0.36 +0.1
983,907 - ABZR87_RS04715 0.36 +0.0
984,007 + ABZR87_RS04715 0.49 -1.4
984,007 + ABZR87_RS04715 0.49 +0.1
984,007 + ABZR87_RS04715 0.49 +0.7
984,008 - ABZR87_RS04715 0.49 +0.8
984,008 - ABZR87_RS04715 0.49 +0.2
984,055 + ABZR87_RS04715 0.55 +0.3
984,055 + ABZR87_RS04715 0.55 +0.1
984,056 - ABZR87_RS04715 0.55 +0.0
984,056 - ABZR87_RS04715 0.55 -0.2
984,056 - ABZR87_RS04715 0.55 -0.1
984,304 + ABZR87_RS04715 0.88 -0.8
984,304 + ABZR87_RS04715 0.88 -0.6
984,304 + ABZR87_RS04715 0.88 +0.4
984,304 + ABZR87_RS04715 0.88 -0.2
984,304 + ABZR87_RS04715 0.88 +0.7
984,304 + ABZR87_RS04715 0.88 +0.3
984,304 + ABZR87_RS04715 0.88 +1.1
984,304 + ABZR87_RS04715 0.88 -0.9
984,304 + ABZR87_RS04715 0.88 -0.5
984,304 + ABZR87_RS04715 0.88 -0.2
984,305 - ABZR87_RS04715 0.88 +0.5
984,305 - ABZR87_RS04715 0.88 +0.7
984,305 - ABZR87_RS04715 0.88 +0.1
984,305 - ABZR87_RS04715 0.88 -0.1
984,305 - ABZR87_RS04715 0.88 -2.1
984,305 - ABZR87_RS04715 0.88 +1.0
984,305 - ABZR87_RS04715 0.88 -0.1
984,305 - ABZR87_RS04715 0.88 +0.2
984,305 - ABZR87_RS04715 0.88 -0.1
984,465 + -0.2
984,465 + +0.3
984,465 + +0.7
984,465 + +1.9
984,465 + +0.0
984,465 + +0.2
984,465 + +1.6
984,466 - +1.6
984,466 - +2.3
984,466 - +0.6
984,466 - +1.0
984,466 - +1.2
984,466 - +1.9
984,466 - +1.7
984,466 - +1.5
984,495 + +0.9
984,510 + +0.8
984,510 + -0.1
984,511 - +1.8
984,515 - +1.4
984,528 - +1.5
984,536 + -0.4
984,536 + -0.2
984,536 + +1.1
984,537 - +0.7
984,538 + -0.4
984,538 + +0.2
984,539 - +1.2
984,762 + ABZR87_RS04720 0.21 +0.4
984,762 + ABZR87_RS04720 0.21 +1.1
984,762 + ABZR87_RS04720 0.21 +0.4
984,763 - ABZR87_RS04720 0.21 +1.6
984,763 - ABZR87_RS04720 0.21 +1.4
984,763 - ABZR87_RS04720 0.21 +1.3
984,763 - ABZR87_RS04720 0.21 +1.2
984,784 - ABZR87_RS04720 0.24 +1.7
984,852 + ABZR87_RS04720 0.32 +0.6
984,852 + ABZR87_RS04720 0.32 +0.4
984,852 + ABZR87_RS04720 0.32 +1.1
984,852 + ABZR87_RS04720 0.32 +0.1
984,853 - ABZR87_RS04720 0.32 +0.8
984,853 - ABZR87_RS04720 0.32 +1.3
984,853 - ABZR87_RS04720 0.32 +1.6
984,853 - ABZR87_RS04720 0.32 +1.4
984,963 + ABZR87_RS04720 0.46 +1.1
984,963 + ABZR87_RS04720 0.46 +1.4
984,963 + ABZR87_RS04720 0.46 +1.7
984,963 + ABZR87_RS04720 0.46 +0.5
984,963 + ABZR87_RS04720 0.46 +1.0
984,964 - ABZR87_RS04720 0.46 +0.9
984,964 - ABZR87_RS04720 0.46 +1.5
984,964 - ABZR87_RS04720 0.46 +0.9
984,964 - ABZR87_RS04720 0.46 +1.5
984,964 - ABZR87_RS04720 0.46 +1.4
984,964 - ABZR87_RS04720 0.46 +1.6
985,032 + ABZR87_RS04720 0.55 +0.8
985,032 + ABZR87_RS04720 0.55 +1.2
985,032 + ABZR87_RS04720 0.55 +1.0
985,032 + ABZR87_RS04720 0.55 +0.6
985,032 + ABZR87_RS04720 0.55 +1.2
985,032 + ABZR87_RS04720 0.55 +0.1
985,032 + ABZR87_RS04720 0.55 -0.0
985,033 - ABZR87_RS04720 0.55 +1.5
985,033 - ABZR87_RS04720 0.55 +1.5
985,033 - ABZR87_RS04720 0.55 +1.2
985,033 - ABZR87_RS04720 0.55 +1.4
985,033 - ABZR87_RS04720 0.55 +2.2
985,033 - ABZR87_RS04720 0.55 +1.6
985,056 + ABZR87_RS04720 0.58 +0.5
985,056 + ABZR87_RS04720 0.58 +0.8
985,056 + ABZR87_RS04720 0.58 +0.7
985,056 + ABZR87_RS04720 0.58 +0.8
985,056 + ABZR87_RS04720 0.58 +0.6
985,056 + ABZR87_RS04720 0.58 -0.3
985,057 - ABZR87_RS04720 0.58 +1.2
985,057 - ABZR87_RS04720 0.58 +1.3
985,057 - ABZR87_RS04720 0.58 +0.7
985,057 - ABZR87_RS04720 0.58 +1.4
985,057 - ABZR87_RS04720 0.58 +1.6
985,057 - ABZR87_RS04720 0.58 +2.0
985,188 + ABZR87_RS04720 0.74 +0.8
985,189 - ABZR87_RS04720 0.75 +0.8
985,250 + ABZR87_RS04720 0.82 +1.5
985,251 - ABZR87_RS04720 0.82 +1.3
985,251 - ABZR87_RS04720 0.82 +1.1
985,251 - ABZR87_RS04720 0.82 +1.3

Or see this region's nucleotide sequence