Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00965

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotidesABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotidesABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotides ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076 _RS00970 Position (kb) 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1at 190.220 kb on + strandat 190.220 kb on + strandat 190.221 kb on - strandat 190.221 kb on - strandat 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.513 kb on + strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.532 kb on + strand, within ABZR87_RS00960at 190.550 kb on - strand, within ABZR87_RS00960at 190.880 kb on + strandat 190.880 kb on + strandat 190.880 kb on + strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.934 kb on - strandat 190.945 kb on + strandat 190.946 kb on - strandat 190.946 kb on - strandat 190.946 kb on - strandat 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.335 kb on + strand, within ABZR87_RS00965at 191.365 kb on + strand, within ABZR87_RS00965at 191.366 kb on - strand, within ABZR87_RS00965at 191.598 kb on - strand, within ABZR87_RS00965at 191.598 kb on - strand, within ABZR87_RS00965at 191.774 kb on + strand, within ABZR87_RS00965at 191.774 kb on + strand, within ABZR87_RS00965at 191.775 kb on - strand, within ABZR87_RS00965at 191.775 kb on - strand, within ABZR87_RS00965at 192.225 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.300 kb on - strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.366 kb on + strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.579 kb on - strand, within ABZR87_RS00965at 192.680 kb on + strandat 192.680 kb on + strandat 192.680 kb on + strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.689 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.827 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.874 kb on - strandat 192.883 kb on - strandat 192.911 kb on + strandat 192.917 kb on + strandat 192.917 kb on + strandat 192.918 kb on - strandat 192.918 kb on - strandat 192.929 kb on + strandat 192.929 kb on + strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.949 kb on + strandat 192.950 kb on - strandat 192.950 kb on - strandat 192.950 kb on - strandat 193.082 kb on + strand, within ABZR87_RS00970at 193.082 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.357 kb on - strand, within ABZR87_RS00970

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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190,220 + -0.7
190,220 + -0.1
190,221 - +0.4
190,221 - -0.1
190,495 + ABZR87_RS00960 0.37 -0.2
190,495 + ABZR87_RS00960 0.37 -0.9
190,495 + ABZR87_RS00960 0.37 -0.8
190,495 + ABZR87_RS00960 0.37 -0.4
190,495 + ABZR87_RS00960 0.37 -0.6
190,495 + ABZR87_RS00960 0.37 +0.2
190,495 + ABZR87_RS00960 0.37 -0.5
190,495 + ABZR87_RS00960 0.37 -0.7
190,495 + ABZR87_RS00960 0.37 +0.4
190,495 + ABZR87_RS00960 0.37 -1.5
190,495 + ABZR87_RS00960 0.37 -0.2
190,496 - ABZR87_RS00960 0.37 -0.7
190,496 - ABZR87_RS00960 0.37 -0.5
190,496 - ABZR87_RS00960 0.37 +0.1
190,496 - ABZR87_RS00960 0.37 -0.6
190,496 - ABZR87_RS00960 0.37 +0.6
190,496 - ABZR87_RS00960 0.37 -0.7
190,513 + ABZR87_RS00960 0.39 -0.3
190,514 - ABZR87_RS00960 0.40 -1.3
190,514 - ABZR87_RS00960 0.40 +0.8
190,514 - ABZR87_RS00960 0.40 -1.5
190,514 - ABZR87_RS00960 0.40 -0.2
190,532 + ABZR87_RS00960 0.42 -1.1
190,550 - ABZR87_RS00960 0.45 +0.7
190,880 + +0.6
190,880 + -0.1
190,880 + -0.1
190,881 - -0.2
190,881 - -0.2
190,881 - -0.0
190,881 - +0.0
190,934 - +0.0
190,945 + -1.4
190,946 - +0.9
190,946 - -1.2
190,946 - +0.2
191,210 + ABZR87_RS00965 0.17 +0.6
191,210 + ABZR87_RS00965 0.17 +0.4
191,210 + ABZR87_RS00965 0.17 +1.2
191,210 + ABZR87_RS00965 0.17 -0.6
191,211 - ABZR87_RS00965 0.17 +1.4
191,211 - ABZR87_RS00965 0.17 +1.1
191,211 - ABZR87_RS00965 0.17 -0.1
191,211 - ABZR87_RS00965 0.17 -0.6
191,335 + ABZR87_RS00965 0.24 -0.9
191,365 + ABZR87_RS00965 0.26 -2.1
191,366 - ABZR87_RS00965 0.26 -0.5
191,598 - ABZR87_RS00965 0.38 +0.4
191,598 - ABZR87_RS00965 0.38 +0.7
191,774 + ABZR87_RS00965 0.47 -0.0
191,774 + ABZR87_RS00965 0.47 +0.2
191,775 - ABZR87_RS00965 0.47 +0.3
191,775 - ABZR87_RS00965 0.47 +0.9
192,225 - ABZR87_RS00965 0.71 +1.4
192,258 - ABZR87_RS00965 0.73 +0.1
192,258 - ABZR87_RS00965 0.73 +1.2
192,299 + ABZR87_RS00965 0.75 +0.1
192,299 + ABZR87_RS00965 0.75 -0.1
192,300 - ABZR87_RS00965 0.75 +0.1
192,305 + ABZR87_RS00965 0.75 +1.1
192,305 + ABZR87_RS00965 0.75 +0.7
192,306 - ABZR87_RS00965 0.75 -0.6
192,306 - ABZR87_RS00965 0.75 +0.8
192,306 - ABZR87_RS00965 0.75 -0.3
192,317 + ABZR87_RS00965 0.76 +0.1
192,317 + ABZR87_RS00965 0.76 +0.1
192,318 - ABZR87_RS00965 0.76 -0.1
192,318 - ABZR87_RS00965 0.76 +0.5
192,318 - ABZR87_RS00965 0.76 -0.5
192,318 - ABZR87_RS00965 0.76 -0.2
192,318 - ABZR87_RS00965 0.76 -0.8
192,366 + ABZR87_RS00965 0.78 +0.4
192,367 - ABZR87_RS00965 0.78 -0.2
192,367 - ABZR87_RS00965 0.78 -1.0
192,367 - ABZR87_RS00965 0.78 +1.0
192,368 + ABZR87_RS00965 0.78 -0.3
192,368 + ABZR87_RS00965 0.78 -0.0
192,368 + ABZR87_RS00965 0.78 +0.2
192,368 + ABZR87_RS00965 0.78 -0.1
192,368 + ABZR87_RS00965 0.78 +0.7
192,368 + ABZR87_RS00965 0.78 +0.2
192,368 + ABZR87_RS00965 0.78 -1.2
192,368 + ABZR87_RS00965 0.78 -0.0
192,368 + ABZR87_RS00965 0.78 +0.6
192,369 - ABZR87_RS00965 0.78 -1.1
192,369 - ABZR87_RS00965 0.78 -0.3
192,369 - ABZR87_RS00965 0.78 +0.0
192,369 - ABZR87_RS00965 0.78 +0.6
192,369 - ABZR87_RS00965 0.78 +0.0
192,378 - ABZR87_RS00965 0.79 +0.3
192,378 - ABZR87_RS00965 0.79 +0.3
192,579 - ABZR87_RS00965 0.90 +0.5
192,680 + +0.4
192,680 + +0.0
192,680 + -0.1
192,681 - +0.1
192,681 - -0.3
192,681 - -0.5
192,681 - -0.1
192,689 + +0.1
192,808 + +0.2
192,808 + +0.3
192,808 + +0.3
192,809 - -0.0
192,809 - +0.7
192,809 - +0.2
192,827 + -0.7
192,865 + -0.3
192,865 + +0.7
192,865 + -0.1
192,865 + -0.0
192,865 + -1.1
192,865 + +0.6
192,865 + +0.5
192,866 - -0.1
192,866 - +0.1
192,866 - -1.3
192,866 - -0.5
192,866 - +0.4
192,866 - -0.6
192,866 - +0.1
192,874 - -1.2
192,883 - -0.8
192,911 + +0.0
192,917 + +0.1
192,917 + -0.2
192,918 - -0.2
192,918 - -1.2
192,929 + -0.0
192,929 + -0.0
192,930 - +0.8
192,930 - -0.2
192,930 - -0.1
192,949 + +0.4
192,950 - -0.1
192,950 - +0.3
192,950 - +0.3
193,082 + ABZR87_RS00970 0.13 -0.5
193,082 + ABZR87_RS00970 0.13 +1.0
193,313 + ABZR87_RS00970 0.34 +1.0
193,313 + ABZR87_RS00970 0.34 +0.0
193,357 - ABZR87_RS00970 0.37 -0.5

Or see this region's nucleotide sequence