Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004243 and ABIE53_004244 are separated by 187 nucleotides ABIE53_004244 and ABIE53_004245 are separated by 79 nucleotides ABIE53_004245 and ABIE53_004246 are separated by 309 nucleotides
ABIE53_004243: ABIE53_004243 - GntR family transcriptional regulator/MocR family aminotransferase, at 419,049 to 420,458
_004243
ABIE53_004244: ABIE53_004244 - nitroreductase, at 420,646 to 421,263
_004244
ABIE53_004245: ABIE53_004245 - FMN-dependent NADH-azoreductase, at 421,343 to 421,993
_004245
ABIE53_004246: ABIE53_004246 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 422,303 to 423,013
_004246
Position (kb) 421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 420.372 kb on + strand at 420.372 kb on + strand at 420.373 kb on - strand at 420.504 kb on + strand at 420.566 kb on + strand at 420.804 kb on - strand, within ABIE53_004244 at 420.808 kb on - strand, within ABIE53_004244 at 421.041 kb on - strand, within ABIE53_004244 at 421.045 kb on - strand, within ABIE53_004244 at 421.075 kb on + strand, within ABIE53_004244 at 421.075 kb on + strand, within ABIE53_004244 at 421.268 kb on + strand at 421.269 kb on - strand at 421.349 kb on - strand at 421.398 kb on + strand at 421.398 kb on + strand at 421.448 kb on - strand, within ABIE53_004245 at 421.470 kb on - strand, within ABIE53_004245 at 421.479 kb on + strand, within ABIE53_004245 at 421.561 kb on - strand, within ABIE53_004245 at 421.815 kb on - strand, within ABIE53_004245 at 421.860 kb on - strand, within ABIE53_004245 at 421.996 kb on + strand at 421.997 kb on - strand at 422.061 kb on - strand at 422.246 kb on + strand at 422.282 kb on + strand at 422.290 kb on + strand at 422.290 kb on + strand at 422.291 kb on - strand at 422.303 kb on - strand at 422.303 kb on - strand at 422.308 kb on + strand at 422.552 kb on + strand, within ABIE53_004246 at 422.552 kb on + strand, within ABIE53_004246 at 422.552 kb on + strand, within ABIE53_004246 at 422.553 kb on - strand, within ABIE53_004246 at 422.570 kb on - strand, within ABIE53_004246 at 422.591 kb on + strand, within ABIE53_004246 at 422.627 kb on + strand, within ABIE53_004246 at 422.627 kb on + strand, within ABIE53_004246 at 422.628 kb on - strand, within ABIE53_004246 at 422.628 kb on - strand, within ABIE53_004246 at 422.628 kb on - strand, within ABIE53_004246 at 422.630 kb on + strand, within ABIE53_004246 at 422.631 kb on - strand, within ABIE53_004246 at 422.631 kb on - strand, within ABIE53_004246 at 422.643 kb on + strand, within ABIE53_004246
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 420,372 + +1.0 420,372 + +1.8 420,373 - -0.9 420,504 + +1.5 420,566 + +0.2 420,804 - ABIE53_004244 0.26 +0.2 420,808 - ABIE53_004244 0.26 -0.8 421,041 - ABIE53_004244 0.64 +0.3 421,045 - ABIE53_004244 0.65 -0.1 421,075 + ABIE53_004244 0.69 +1.5 421,075 + ABIE53_004244 0.69 +3.1 421,268 + +0.9 421,269 - -2.9 421,349 - +0.5 421,398 + -0.3 421,398 + -0.2 421,448 - ABIE53_004245 0.16 +1.6 421,470 - ABIE53_004245 0.20 +0.5 421,479 + ABIE53_004245 0.21 +0.9 421,561 - ABIE53_004245 0.33 +0.6 421,815 - ABIE53_004245 0.73 +2.5 421,860 - ABIE53_004245 0.79 +0.7 421,996 + -0.9 421,997 - +0.8 422,061 - -0.1 422,246 + +0.6 422,282 + -1.1 422,290 + -0.8 422,290 + -0.6 422,291 - -0.0 422,303 - -0.2 422,303 - -1.4 422,308 + +0.4 422,552 + ABIE53_004246 0.35 +1.3 422,552 + ABIE53_004246 0.35 +1.5 422,552 + ABIE53_004246 0.35 -1.4 422,553 - ABIE53_004246 0.35 -0.2 422,570 - ABIE53_004246 0.38 +0.1 422,591 + ABIE53_004246 0.41 -0.9 422,627 + ABIE53_004246 0.46 +0.3 422,627 + ABIE53_004246 0.46 -0.2 422,628 - ABIE53_004246 0.46 +1.8 422,628 - ABIE53_004246 0.46 +2.5 422,628 - ABIE53_004246 0.46 -0.1 422,630 + ABIE53_004246 0.46 +0.6 422,631 - ABIE53_004246 0.46 -0.6 422,631 - ABIE53_004246 0.46 -0.1 422,643 + ABIE53_004246 0.48 +2.1
Or see this region's nucleotide sequence