Strain Fitness in Sinorhizobium meliloti 1021 around SMc04461

Experiment: Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02941 and SMc02942 are separated by 191 nucleotidesSMc02942 and SMc04461 are separated by 265 nucleotidesSMc04461 and SMc03956 are separated by 71 nucleotides SMc02941: SMc02941 - hypothetical protein, at 2,945,592 to 2,946,629 SMc02941 SMc02942: SMc02942 - peptidoglycan-associated lipoprotein, at 2,946,821 to 2,947,351 SMc02942 SMc04461: SMc04461 - translocation protein TolB, at 2,947,617 to 2,948,927 SMc04461 SMc03956: SMc03956 - signal peptide protein, at 2,948,999 to 2,950,069 SMc03956 Position (kb) 2947 2948 2949Strain fitness (log2 ratio) -3 -2 -1 0 1at 2946.683 kb on - strandat 2946.809 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
remove
2,946,683 - -0.5
2,946,809 + -3.2

Or see this region's nucleotide sequence