Strain Fitness in Sinorhizobium meliloti 1021 around SMc03783

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03782 and SMc03783 overlap by 11 nucleotidesSMc03783 and SMc03784 are separated by 181 nucleotides SMc03782: SMc03782 - signal peptide protein, at 3,446,584 to 3,447,966 SMc03782 SMc03783: SMc03783 - carboxy-terminal processing protease precursor signal peptide protein, at 3,447,956 to 3,449,278 SMc03783 SMc03784: SMc03784 - hypothetical protein, at 3,449,460 to 3,450,662 SMc03784 Position (kb) 3447 3448 3449 3450Strain fitness (log2 ratio) -2 -1 0 1at 3449.348 kb on + strandat 3449.348 kb on + strandat 3449.350 kb on + strandat 3449.351 kb on - strandat 3449.353 kb on + strandat 3449.354 kb on - strandat 3449.354 kb on - strandat 3449.788 kb on - strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,449,348 + -0.4
3,449,348 + -1.3
3,449,350 + +0.1
3,449,351 - +0.4
3,449,353 + -0.2
3,449,354 - +0.0
3,449,354 - -0.7
3,449,788 - SMc03784 0.27 +1.0
3,449,955 + SMc03784 0.41 -2.0
3,449,955 + SMc03784 0.41 +0.7
3,449,956 - SMc03784 0.41 +0.6
3,449,956 - SMc03784 0.41 -0.8
3,450,273 + SMc03784 0.68 +0.2
3,450,273 + SMc03784 0.68 -0.2
3,450,274 - SMc03784 0.68 +1.1
3,450,274 - SMc03784 0.68 -0.6
3,450,274 - SMc03784 0.68 +0.4

Or see this region's nucleotide sequence