Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03203 and SMc03204 are separated by 6 nucleotides SMc03204 and SMc03205 are separated by 384 nucleotides
SMc03203: SMc03203 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) , at 3,167,147 to 3,168,427
SMc03203
SMc03204: SMc03204 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) , at 3,168,434 to 3,169,828
SMc03204
SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097
SMc03205
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3167.817 kb on - strand, within SMc03203 at 3167.817 kb on - strand, within SMc03203 at 3167.817 kb on - strand, within SMc03203 at 3167.931 kb on + strand, within SMc03203 at 3168.211 kb on + strand, within SMc03203 at 3168.212 kb on - strand, within SMc03203 at 3168.425 kb on + strand at 3168.426 kb on - strand at 3168.798 kb on + strand, within SMc03204 at 3168.992 kb on - strand, within SMc03204 at 3169.353 kb on - strand, within SMc03204 at 3169.442 kb on - strand, within SMc03204 at 3169.752 kb on + strand at 3169.752 kb on + strand at 3169.752 kb on + strand at 3169.753 kb on - strand at 3170.020 kb on - strand at 3170.143 kb on - strand at 3170.165 kb on + strand at 3170.169 kb on - strand at 3170.185 kb on + strand at 3170.186 kb on - strand at 3170.236 kb on - strand at 3170.788 kb on - strand, within SMc03205
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 3,167,817 - SMc03203 0.52 -0.2 3,167,817 - SMc03203 0.52 +0.3 3,167,817 - SMc03203 0.52 +0.4 3,167,931 + SMc03203 0.61 -0.4 3,168,211 + SMc03203 0.83 -0.0 3,168,212 - SMc03203 0.83 +1.0 3,168,425 + -0.4 3,168,426 - -0.6 3,168,798 + SMc03204 0.26 -0.9 3,168,992 - SMc03204 0.40 -1.2 3,169,353 - SMc03204 0.66 -0.1 3,169,442 - SMc03204 0.72 +0.1 3,169,752 + -0.4 3,169,752 + +1.3 3,169,752 + -0.7 3,169,753 - +1.1 3,170,020 - -0.4 3,170,143 - -0.1 3,170,165 + -0.0 3,170,169 - +3.4 3,170,185 + -0.2 3,170,186 - +0.1 3,170,236 - -0.2 3,170,788 - SMc03205 0.65 -1.3
Or see this region's nucleotide sequence