Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01669 and SMc01670 are separated by 52 nucleotides SMc01670 and SMc01671 are separated by 49 nucleotides
SMc01669: SMc01669 - enoyl-CoA hydratase, at 2,472,203 to 2,472,994
SMc01669
SMc01670: SMc01670 - hypothetical protein, at 2,473,047 to 2,473,526
SMc01670
SMc01671: SMc01671 - hypothetical protein, at 2,473,576 to 2,474,889
SMc01671
Position (kb)
2473
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2 at 2472.980 kb on + strand at 2472.981 kb on - strand at 2473.048 kb on + strand at 2473.215 kb on + strand, within SMc01670 at 2473.215 kb on + strand, within SMc01670 at 2473.216 kb on - strand, within SMc01670 at 2473.216 kb on - strand, within SMc01670 at 2473.246 kb on + strand, within SMc01670 at 2473.246 kb on + strand, within SMc01670 at 2473.271 kb on + strand, within SMc01670 at 2473.273 kb on + strand, within SMc01670 at 2473.274 kb on - strand, within SMc01670 at 2473.316 kb on + strand, within SMc01670 at 2473.317 kb on - strand, within SMc01670 at 2473.317 kb on - strand, within SMc01670 at 2473.437 kb on + strand, within SMc01670 at 2473.437 kb on + strand, within SMc01670 at 2473.438 kb on - strand, within SMc01670 at 2473.556 kb on + strand at 2473.908 kb on + strand, within SMc01671 at 2474.037 kb on - strand, within SMc01671 at 2474.112 kb on - strand, within SMc01671 at 2474.261 kb on + strand, within SMc01671 at 2474.310 kb on - strand, within SMc01671 at 2474.310 kb on - strand, within SMc01671 at 2474.330 kb on + strand, within SMc01671 at 2474.330 kb on + strand, within SMc01671 at 2474.591 kb on + strand, within SMc01671 at 2474.778 kb on + strand at 2474.778 kb on + strand at 2474.811 kb on - strand at 2474.960 kb on - strand at 2474.964 kb on + strand at 2474.965 kb on - strand at 2474.965 kb on - strand at 2475.009 kb on - strand at 2475.009 kb on - strand at 2475.023 kb on - strand at 2475.023 kb on - strand at 2475.051 kb on + strand at 2475.128 kb on + strand at 2475.137 kb on + strand at 2475.137 kb on + strand at 2475.138 kb on - strand at 2475.138 kb on - strand at 2475.138 kb on - strand at 2475.138 kb on - strand at 2475.138 kb on - strand at 2475.350 kb on - strand at 2475.389 kb on + strand at 2475.691 kb on + strand at 2475.692 kb on - strand at 2475.692 kb on - strand at 2475.692 kb on - strand at 2475.695 kb on - strand at 2475.784 kb on - strand at 2475.794 kb on + strand at 2475.794 kb on + strand at 2475.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 2,472,980 + +0.5 2,472,981 - -0.6 2,473,048 + -0.5 2,473,215 + SMc01670 0.35 -0.3 2,473,215 + SMc01670 0.35 -1.6 2,473,216 - SMc01670 0.35 +0.0 2,473,216 - SMc01670 0.35 -0.0 2,473,246 + SMc01670 0.41 -0.1 2,473,246 + SMc01670 0.41 +0.3 2,473,271 + SMc01670 0.47 -1.0 2,473,273 + SMc01670 0.47 -0.1 2,473,274 - SMc01670 0.47 +0.1 2,473,316 + SMc01670 0.56 -0.1 2,473,317 - SMc01670 0.56 +0.2 2,473,317 - SMc01670 0.56 +0.3 2,473,437 + SMc01670 0.81 +0.5 2,473,437 + SMc01670 0.81 -0.5 2,473,438 - SMc01670 0.81 -0.2 2,473,556 + -0.5 2,473,908 + SMc01671 0.25 -1.4 2,474,037 - SMc01671 0.35 -1.1 2,474,112 - SMc01671 0.41 -0.1 2,474,261 + SMc01671 0.52 -1.0 2,474,310 - SMc01671 0.56 -1.4 2,474,310 - SMc01671 0.56 -0.4 2,474,330 + SMc01671 0.57 -1.5 2,474,330 + SMc01671 0.57 +0.0 2,474,591 + SMc01671 0.77 +0.0 2,474,778 + +0.4 2,474,778 + -0.5 2,474,811 - -0.4 2,474,960 - -0.8 2,474,964 + +0.6 2,474,965 - -0.0 2,474,965 - -0.3 2,475,009 - -0.2 2,475,009 - -0.7 2,475,023 - +0.2 2,475,023 - +0.5 2,475,051 + +1.8 2,475,128 + +0.6 2,475,137 + -0.7 2,475,137 + +0.2 2,475,138 - +0.6 2,475,138 - -1.2 2,475,138 - +0.6 2,475,138 - -0.7 2,475,138 - -0.7 2,475,350 - +0.8 2,475,389 + -0.1 2,475,691 + +0.2 2,475,692 - -0.1 2,475,692 - -0.1 2,475,692 - +2.1 2,475,695 - -0.7 2,475,784 - -0.5 2,475,794 + +0.1 2,475,794 + -0.3 2,475,794 + +0.1
Or see this region's nucleotide sequence