Strain Fitness in Sinorhizobium meliloti 1021 around SMc01671

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01669 and SMc01670 are separated by 52 nucleotidesSMc01670 and SMc01671 are separated by 49 nucleotides SMc01669: SMc01669 - enoyl-CoA hydratase, at 2,472,203 to 2,472,994 SMc01669 SMc01670: SMc01670 - hypothetical protein, at 2,473,047 to 2,473,526 SMc01670 SMc01671: SMc01671 - hypothetical protein, at 2,473,576 to 2,474,889 SMc01671 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -1 0 1 2at 2472.980 kb on + strandat 2472.981 kb on - strandat 2473.048 kb on + strandat 2473.215 kb on + strand, within SMc01670at 2473.215 kb on + strand, within SMc01670at 2473.216 kb on - strand, within SMc01670at 2473.216 kb on - strand, within SMc01670at 2473.246 kb on + strand, within SMc01670at 2473.246 kb on + strand, within SMc01670at 2473.271 kb on + strand, within SMc01670at 2473.273 kb on + strand, within SMc01670at 2473.274 kb on - strand, within SMc01670at 2473.316 kb on + strand, within SMc01670at 2473.317 kb on - strand, within SMc01670at 2473.317 kb on - strand, within SMc01670at 2473.437 kb on + strand, within SMc01670at 2473.437 kb on + strand, within SMc01670at 2473.438 kb on - strand, within SMc01670at 2473.556 kb on + strandat 2473.908 kb on + strand, within SMc01671at 2474.037 kb on - strand, within SMc01671at 2474.112 kb on - strand, within SMc01671at 2474.261 kb on + strand, within SMc01671at 2474.310 kb on - strand, within SMc01671at 2474.310 kb on - strand, within SMc01671at 2474.330 kb on + strand, within SMc01671at 2474.330 kb on + strand, within SMc01671at 2474.591 kb on + strand, within SMc01671at 2474.778 kb on + strandat 2474.778 kb on + strandat 2474.811 kb on - strandat 2474.960 kb on - strandat 2474.964 kb on + strandat 2474.965 kb on - strandat 2474.965 kb on - strandat 2475.009 kb on - strandat 2475.009 kb on - strandat 2475.023 kb on - strandat 2475.023 kb on - strandat 2475.051 kb on + strandat 2475.128 kb on + strandat 2475.137 kb on + strandat 2475.137 kb on + strandat 2475.138 kb on - strandat 2475.138 kb on - strandat 2475.138 kb on - strandat 2475.138 kb on - strandat 2475.138 kb on - strandat 2475.350 kb on - strandat 2475.389 kb on + strandat 2475.691 kb on + strandat 2475.692 kb on - strandat 2475.692 kb on - strandat 2475.692 kb on - strandat 2475.695 kb on - strandat 2475.784 kb on - strandat 2475.794 kb on + strandat 2475.794 kb on + strandat 2475.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,472,980 + +0.5
2,472,981 - -0.6
2,473,048 + -0.5
2,473,215 + SMc01670 0.35 -0.3
2,473,215 + SMc01670 0.35 -1.6
2,473,216 - SMc01670 0.35 +0.0
2,473,216 - SMc01670 0.35 -0.0
2,473,246 + SMc01670 0.41 -0.1
2,473,246 + SMc01670 0.41 +0.3
2,473,271 + SMc01670 0.47 -1.0
2,473,273 + SMc01670 0.47 -0.1
2,473,274 - SMc01670 0.47 +0.1
2,473,316 + SMc01670 0.56 -0.1
2,473,317 - SMc01670 0.56 +0.2
2,473,317 - SMc01670 0.56 +0.3
2,473,437 + SMc01670 0.81 +0.5
2,473,437 + SMc01670 0.81 -0.5
2,473,438 - SMc01670 0.81 -0.2
2,473,556 + -0.5
2,473,908 + SMc01671 0.25 -1.4
2,474,037 - SMc01671 0.35 -1.1
2,474,112 - SMc01671 0.41 -0.1
2,474,261 + SMc01671 0.52 -1.0
2,474,310 - SMc01671 0.56 -1.4
2,474,310 - SMc01671 0.56 -0.4
2,474,330 + SMc01671 0.57 -1.5
2,474,330 + SMc01671 0.57 +0.0
2,474,591 + SMc01671 0.77 +0.0
2,474,778 + +0.4
2,474,778 + -0.5
2,474,811 - -0.4
2,474,960 - -0.8
2,474,964 + +0.6
2,474,965 - -0.0
2,474,965 - -0.3
2,475,009 - -0.2
2,475,009 - -0.7
2,475,023 - +0.2
2,475,023 - +0.5
2,475,051 + +1.8
2,475,128 + +0.6
2,475,137 + -0.7
2,475,137 + +0.2
2,475,138 - +0.6
2,475,138 - -1.2
2,475,138 - +0.6
2,475,138 - -0.7
2,475,138 - -0.7
2,475,350 - +0.8
2,475,389 + -0.1
2,475,691 + +0.2
2,475,692 - -0.1
2,475,692 - -0.1
2,475,692 - +2.1
2,475,695 - -0.7
2,475,784 - -0.5
2,475,794 + +0.1
2,475,794 + -0.3
2,475,794 + +0.1

Or see this region's nucleotide sequence