Strain Fitness in Sinorhizobium meliloti 1021 around SMc01203

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01204 and SMc01203 are separated by 791 nucleotidesSMc01203 and SMc01202 are separated by 133 nucleotides SMc01204: SMc01204 - transmembrane oxidoreductase, at 1,724,938 to 1,725,822 SMc01204 SMc01203: SMc01203 - hypothetical protein, at 1,726,614 to 1,727,201 SMc01203 SMc01202: SMc01202 - lipoprotein, at 1,727,335 to 1,727,919 SMc01202 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -3 -2 -1 0 1at 1725.907 kb on - strandat 1725.967 kb on + strandat 1725.967 kb on + strandat 1726.312 kb on + strandat 1726.358 kb on - strandat 1726.360 kb on - strandat 1726.384 kb on + strandat 1726.384 kb on + strandat 1726.385 kb on - strandat 1726.385 kb on - strandat 1726.385 kb on - strandat 1726.427 kb on - strandat 1726.619 kb on - strandat 1726.619 kb on - strandat 1726.624 kb on + strandat 1726.654 kb on + strandat 1726.655 kb on - strandat 1726.655 kb on - strandat 1726.655 kb on - strandat 1726.655 kb on - strandat 1726.655 kb on - strandat 1726.811 kb on + strand, within SMc01203at 1726.812 kb on - strand, within SMc01203at 1726.812 kb on - strand, within SMc01203at 1726.813 kb on + strand, within SMc01203at 1726.813 kb on + strand, within SMc01203at 1726.813 kb on + strand, within SMc01203at 1726.813 kb on + strand, within SMc01203at 1726.814 kb on - strand, within SMc01203at 1726.814 kb on - strand, within SMc01203at 1726.814 kb on - strand, within SMc01203at 1727.020 kb on + strand, within SMc01203at 1727.128 kb on + strand, within SMc01203at 1727.129 kb on - strand, within SMc01203at 1727.146 kb on + strandat 1727.193 kb on + strandat 1727.205 kb on + strandat 1727.205 kb on + strandat 1727.206 kb on - strandat 1727.206 kb on - strandat 1727.206 kb on - strandat 1727.206 kb on - strandat 1727.287 kb on + strandat 1727.287 kb on + strandat 1727.287 kb on + strandat 1727.364 kb on + strandat 1727.365 kb on - strandat 1727.403 kb on + strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.404 kb on - strand, within SMc01202at 1727.405 kb on + strand, within SMc01202at 1727.405 kb on + strand, within SMc01202at 1727.406 kb on - strand, within SMc01202at 1727.450 kb on + strand, within SMc01202at 1727.558 kb on + strand, within SMc01202at 1727.559 kb on - strand, within SMc01202at 1727.628 kb on - strand, within SMc01202at 1727.628 kb on - strand, within SMc01202at 1727.628 kb on - strand, within SMc01202at 1727.717 kb on + strand, within SMc01202at 1727.717 kb on + strand, within SMc01202at 1727.717 kb on + strand, within SMc01202at 1727.718 kb on - strand, within SMc01202at 1727.718 kb on - strand, within SMc01202at 1727.718 kb on - strand, within SMc01202at 1727.718 kb on - strand, within SMc01202at 1727.742 kb on - strand, within SMc01202at 1727.765 kb on + strand, within SMc01202at 1727.929 kb on + strandat 1727.929 kb on + strandat 1727.929 kb on + strandat 1727.929 kb on + strandat 1727.930 kb on - strandat 1727.930 kb on - strandat 1727.930 kb on - strandat 1727.930 kb on - strandat 1727.992 kb on - strandat 1727.994 kb on + strandat 1727.995 kb on - strandat 1727.995 kb on - strandat 1727.995 kb on - strandat 1727.995 kb on - strandat 1727.995 kb on - strandat 1728.028 kb on + strandat 1728.082 kb on + strandat 1728.083 kb on - strandat 1728.089 kb on - strandat 1728.105 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,725,907 - -1.0
1,725,967 + -2.4
1,725,967 + -1.9
1,726,312 + -0.7
1,726,358 - -1.5
1,726,360 - -1.8
1,726,384 + -0.4
1,726,384 + +1.4
1,726,385 - +0.4
1,726,385 - -1.4
1,726,385 - +0.9
1,726,427 - -0.4
1,726,619 - -0.6
1,726,619 - -0.1
1,726,624 + -1.2
1,726,654 + -0.7
1,726,655 - -0.7
1,726,655 - -1.6
1,726,655 - -0.4
1,726,655 - +0.6
1,726,655 - -0.5
1,726,811 + SMc01203 0.34 -0.5
1,726,812 - SMc01203 0.34 -0.5
1,726,812 - SMc01203 0.34 -0.5
1,726,813 + SMc01203 0.34 -1.8
1,726,813 + SMc01203 0.34 -0.8
1,726,813 + SMc01203 0.34 -1.6
1,726,813 + SMc01203 0.34 -1.0
1,726,814 - SMc01203 0.34 +0.1
1,726,814 - SMc01203 0.34 -0.3
1,726,814 - SMc01203 0.34 -1.6
1,727,020 + SMc01203 0.69 -0.8
1,727,128 + SMc01203 0.87 +1.4
1,727,129 - SMc01203 0.88 -1.5
1,727,146 + -0.8
1,727,193 + -0.6
1,727,205 + -1.9
1,727,205 + -3.7
1,727,206 - -2.5
1,727,206 - -1.1
1,727,206 - +0.9
1,727,206 - -0.2
1,727,287 + -0.6
1,727,287 + +0.3
1,727,287 + -1.1
1,727,364 + -1.7
1,727,365 - -0.3
1,727,403 + SMc01202 0.12 -1.7
1,727,404 - SMc01202 0.12 +0.3
1,727,404 - SMc01202 0.12 -0.3
1,727,404 - SMc01202 0.12 -0.7
1,727,404 - SMc01202 0.12 +0.5
1,727,404 - SMc01202 0.12 +0.0
1,727,404 - SMc01202 0.12 +0.1
1,727,405 + SMc01202 0.12 +0.7
1,727,405 + SMc01202 0.12 -2.6
1,727,406 - SMc01202 0.12 -0.2
1,727,450 + SMc01202 0.20 -0.2
1,727,558 + SMc01202 0.38 -0.8
1,727,559 - SMc01202 0.38 +0.2
1,727,628 - SMc01202 0.50 -0.3
1,727,628 - SMc01202 0.50 -0.3
1,727,628 - SMc01202 0.50 +1.0
1,727,717 + SMc01202 0.65 -0.7
1,727,717 + SMc01202 0.65 -0.1
1,727,717 + SMc01202 0.65 -1.1
1,727,718 - SMc01202 0.65 +0.4
1,727,718 - SMc01202 0.65 +0.3
1,727,718 - SMc01202 0.65 -0.4
1,727,718 - SMc01202 0.65 -0.2
1,727,742 - SMc01202 0.70 -0.5
1,727,765 + SMc01202 0.74 -0.8
1,727,929 + +0.1
1,727,929 + -0.5
1,727,929 + +0.1
1,727,929 + -0.7
1,727,930 - -0.5
1,727,930 - -0.2
1,727,930 - +0.6
1,727,930 - +0.1
1,727,992 - -0.3
1,727,994 + +0.9
1,727,995 - -0.7
1,727,995 - -0.3
1,727,995 - -0.7
1,727,995 - +0.0
1,727,995 - +0.1
1,728,028 + -0.9
1,728,082 + +0.4
1,728,083 - +0.3
1,728,089 - +0.2
1,728,105 + +0.2

Or see this region's nucleotide sequence