Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01204 and SMc01203 are separated by 791 nucleotides SMc01203 and SMc01202 are separated by 133 nucleotides
SMc01204: SMc01204 - transmembrane oxidoreductase, at 1,724,938 to 1,725,822
SMc01204
SMc01203: SMc01203 - hypothetical protein, at 1,726,614 to 1,727,201
SMc01203
SMc01202: SMc01202 - lipoprotein, at 1,727,335 to 1,727,919
SMc01202
Position (kb)
1726
1727
1728 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1725.907 kb on - strand at 1725.967 kb on + strand at 1725.967 kb on + strand at 1726.312 kb on + strand at 1726.358 kb on - strand at 1726.360 kb on - strand at 1726.384 kb on + strand at 1726.384 kb on + strand at 1726.385 kb on - strand at 1726.385 kb on - strand at 1726.385 kb on - strand at 1726.427 kb on - strand at 1726.619 kb on - strand at 1726.619 kb on - strand at 1726.624 kb on + strand at 1726.654 kb on + strand at 1726.655 kb on - strand at 1726.655 kb on - strand at 1726.655 kb on - strand at 1726.655 kb on - strand at 1726.655 kb on - strand at 1726.811 kb on + strand, within SMc01203 at 1726.812 kb on - strand, within SMc01203 at 1726.812 kb on - strand, within SMc01203 at 1726.813 kb on + strand, within SMc01203 at 1726.813 kb on + strand, within SMc01203 at 1726.813 kb on + strand, within SMc01203 at 1726.813 kb on + strand, within SMc01203 at 1726.814 kb on - strand, within SMc01203 at 1726.814 kb on - strand, within SMc01203 at 1726.814 kb on - strand, within SMc01203 at 1727.020 kb on + strand, within SMc01203 at 1727.128 kb on + strand, within SMc01203 at 1727.129 kb on - strand, within SMc01203 at 1727.146 kb on + strand at 1727.193 kb on + strand at 1727.205 kb on + strand at 1727.205 kb on + strand at 1727.206 kb on - strand at 1727.206 kb on - strand at 1727.206 kb on - strand at 1727.206 kb on - strand at 1727.287 kb on + strand at 1727.287 kb on + strand at 1727.287 kb on + strand at 1727.364 kb on + strand at 1727.365 kb on - strand at 1727.403 kb on + strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.404 kb on - strand, within SMc01202 at 1727.405 kb on + strand, within SMc01202 at 1727.405 kb on + strand, within SMc01202 at 1727.406 kb on - strand, within SMc01202 at 1727.450 kb on + strand, within SMc01202 at 1727.558 kb on + strand, within SMc01202 at 1727.559 kb on - strand, within SMc01202 at 1727.628 kb on - strand, within SMc01202 at 1727.628 kb on - strand, within SMc01202 at 1727.628 kb on - strand, within SMc01202 at 1727.717 kb on + strand, within SMc01202 at 1727.717 kb on + strand, within SMc01202 at 1727.717 kb on + strand, within SMc01202 at 1727.718 kb on - strand, within SMc01202 at 1727.718 kb on - strand, within SMc01202 at 1727.718 kb on - strand, within SMc01202 at 1727.718 kb on - strand, within SMc01202 at 1727.742 kb on - strand, within SMc01202 at 1727.765 kb on + strand, within SMc01202 at 1727.929 kb on + strand at 1727.929 kb on + strand at 1727.929 kb on + strand at 1727.929 kb on + strand at 1727.930 kb on - strand at 1727.930 kb on - strand at 1727.930 kb on - strand at 1727.930 kb on - strand at 1727.992 kb on - strand at 1727.994 kb on + strand at 1727.995 kb on - strand at 1727.995 kb on - strand at 1727.995 kb on - strand at 1727.995 kb on - strand at 1727.995 kb on - strand at 1728.028 kb on + strand at 1728.082 kb on + strand at 1728.083 kb on - strand at 1728.089 kb on - strand at 1728.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,725,907 - -1.0 1,725,967 + -2.4 1,725,967 + -1.9 1,726,312 + -0.7 1,726,358 - -1.5 1,726,360 - -1.8 1,726,384 + -0.4 1,726,384 + +1.4 1,726,385 - +0.4 1,726,385 - -1.4 1,726,385 - +0.9 1,726,427 - -0.4 1,726,619 - -0.6 1,726,619 - -0.1 1,726,624 + -1.2 1,726,654 + -0.7 1,726,655 - -0.7 1,726,655 - -1.6 1,726,655 - -0.4 1,726,655 - +0.6 1,726,655 - -0.5 1,726,811 + SMc01203 0.34 -0.5 1,726,812 - SMc01203 0.34 -0.5 1,726,812 - SMc01203 0.34 -0.5 1,726,813 + SMc01203 0.34 -1.8 1,726,813 + SMc01203 0.34 -0.8 1,726,813 + SMc01203 0.34 -1.6 1,726,813 + SMc01203 0.34 -1.0 1,726,814 - SMc01203 0.34 +0.1 1,726,814 - SMc01203 0.34 -0.3 1,726,814 - SMc01203 0.34 -1.6 1,727,020 + SMc01203 0.69 -0.8 1,727,128 + SMc01203 0.87 +1.4 1,727,129 - SMc01203 0.88 -1.5 1,727,146 + -0.8 1,727,193 + -0.6 1,727,205 + -1.9 1,727,205 + -3.7 1,727,206 - -2.5 1,727,206 - -1.1 1,727,206 - +0.9 1,727,206 - -0.2 1,727,287 + -0.6 1,727,287 + +0.3 1,727,287 + -1.1 1,727,364 + -1.7 1,727,365 - -0.3 1,727,403 + SMc01202 0.12 -1.7 1,727,404 - SMc01202 0.12 +0.3 1,727,404 - SMc01202 0.12 -0.3 1,727,404 - SMc01202 0.12 -0.7 1,727,404 - SMc01202 0.12 +0.5 1,727,404 - SMc01202 0.12 +0.0 1,727,404 - SMc01202 0.12 +0.1 1,727,405 + SMc01202 0.12 +0.7 1,727,405 + SMc01202 0.12 -2.6 1,727,406 - SMc01202 0.12 -0.2 1,727,450 + SMc01202 0.20 -0.2 1,727,558 + SMc01202 0.38 -0.8 1,727,559 - SMc01202 0.38 +0.2 1,727,628 - SMc01202 0.50 -0.3 1,727,628 - SMc01202 0.50 -0.3 1,727,628 - SMc01202 0.50 +1.0 1,727,717 + SMc01202 0.65 -0.7 1,727,717 + SMc01202 0.65 -0.1 1,727,717 + SMc01202 0.65 -1.1 1,727,718 - SMc01202 0.65 +0.4 1,727,718 - SMc01202 0.65 +0.3 1,727,718 - SMc01202 0.65 -0.4 1,727,718 - SMc01202 0.65 -0.2 1,727,742 - SMc01202 0.70 -0.5 1,727,765 + SMc01202 0.74 -0.8 1,727,929 + +0.1 1,727,929 + -0.5 1,727,929 + +0.1 1,727,929 + -0.7 1,727,930 - -0.5 1,727,930 - -0.2 1,727,930 - +0.6 1,727,930 - +0.1 1,727,992 - -0.3 1,727,994 + +0.9 1,727,995 - -0.7 1,727,995 - -0.3 1,727,995 - -0.7 1,727,995 - +0.0 1,727,995 - +0.1 1,728,028 + -0.9 1,728,082 + +0.4 1,728,083 - +0.3 1,728,089 - +0.2 1,728,105 + +0.2
Or see this region's nucleotide sequence