Strain Fitness in Sinorhizobium meliloti 1021 around SMc00457

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00128 and SMc00457 overlap by 8 nucleotidesSMc00457 and SMc00122 are separated by 97 nucleotides SMc00128: SMc00128 - hypothetical protein, at 1,099,690 to 1,100,235 SMc00128 SMc00457: SMc00457 - hypothetical protein, at 1,100,228 to 1,100,815 SMc00457 SMc00122: SMc00122 - penicillin-binding protein, at 1,100,913 to 1,103,147 SMc00122 Position (kb) 1100 1101Strain fitness (log2 ratio) -1 0 1 2at 1099.374 kb on - strandat 1099.378 kb on + strandat 1099.379 kb on - strandat 1099.400 kb on + strandat 1099.400 kb on + strandat 1099.423 kb on + strandat 1099.692 kb on - strandat 1100.846 kb on - strandat 1100.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,099,374 - -0.4
1,099,378 + +0.6
1,099,379 - -0.3
1,099,400 + +2.1
1,099,400 + +2.2
1,099,423 + +0.4
1,099,692 - +0.9
1,100,846 - +0.1
1,100,846 - -0.5

Or see this region's nucleotide sequence