Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00316 and SMc00317 overlap by 33 nucleotides SMc00317 and SMc00248 are separated by 139 nucleotides
SMc00316: SMc00316 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,815,870 to 1,817,147
SMc00316
SMc00317: SMc00317 - hypothetical protein, at 1,817,115 to 1,818,077
SMc00317
SMc00248: SMc00248 - cytochrome C-type biogenesis protein, at 1,818,217 to 1,818,960
SMc00248
Position (kb)
1817
1818
1819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1817.077 kb on + strand at 1817.078 kb on - strand at 1817.078 kb on - strand at 1817.116 kb on + strand at 1817.151 kb on + strand at 1817.152 kb on - strand at 1817.159 kb on - strand at 1817.159 kb on - strand at 1817.320 kb on + strand, within SMc00317 at 1817.320 kb on + strand, within SMc00317 at 1817.321 kb on - strand, within SMc00317 at 1817.321 kb on - strand, within SMc00317 at 1817.347 kb on + strand, within SMc00317 at 1817.347 kb on + strand, within SMc00317 at 1817.347 kb on + strand, within SMc00317 at 1817.389 kb on + strand, within SMc00317 at 1817.390 kb on - strand, within SMc00317 at 1817.390 kb on - strand, within SMc00317 at 1817.390 kb on - strand, within SMc00317 at 1817.409 kb on - strand, within SMc00317 at 1817.483 kb on - strand, within SMc00317 at 1817.578 kb on - strand, within SMc00317 at 1817.753 kb on - strand, within SMc00317 at 1817.753 kb on - strand, within SMc00317 at 1817.753 kb on - strand, within SMc00317 at 1817.760 kb on - strand, within SMc00317 at 1817.768 kb on - strand, within SMc00317 at 1817.807 kb on + strand, within SMc00317 at 1817.808 kb on - strand, within SMc00317 at 1817.808 kb on - strand, within SMc00317 at 1817.808 kb on - strand, within SMc00317 at 1817.829 kb on + strand, within SMc00317 at 1817.830 kb on - strand, within SMc00317 at 1817.857 kb on + strand, within SMc00317 at 1817.857 kb on + strand, within SMc00317 at 1817.858 kb on - strand, within SMc00317 at 1817.858 kb on - strand, within SMc00317 at 1817.897 kb on + strand, within SMc00317 at 1817.898 kb on - strand, within SMc00317 at 1817.898 kb on - strand, within SMc00317 at 1818.205 kb on - strand at 1819.007 kb on + strand at 1819.008 kb on - strand at 1819.008 kb on - strand at 1819.008 kb on - strand at 1819.008 kb on - strand at 1819.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,817,077 + -0.2 1,817,078 - -0.8 1,817,078 - +0.0 1,817,116 + -0.1 1,817,151 + -0.8 1,817,152 - +2.2 1,817,159 - -1.7 1,817,159 - +0.6 1,817,320 + SMc00317 0.21 -0.6 1,817,320 + SMc00317 0.21 -1.1 1,817,321 - SMc00317 0.21 -0.3 1,817,321 - SMc00317 0.21 -0.5 1,817,347 + SMc00317 0.24 +0.3 1,817,347 + SMc00317 0.24 -0.1 1,817,347 + SMc00317 0.24 +0.4 1,817,389 + SMc00317 0.28 -2.2 1,817,390 - SMc00317 0.29 +0.4 1,817,390 - SMc00317 0.29 -1.9 1,817,390 - SMc00317 0.29 +1.0 1,817,409 - SMc00317 0.31 +1.7 1,817,483 - SMc00317 0.38 +0.0 1,817,578 - SMc00317 0.48 +0.0 1,817,753 - SMc00317 0.66 -0.3 1,817,753 - SMc00317 0.66 -0.1 1,817,753 - SMc00317 0.66 -2.0 1,817,760 - SMc00317 0.67 -0.6 1,817,768 - SMc00317 0.68 -0.3 1,817,807 + SMc00317 0.72 +0.2 1,817,808 - SMc00317 0.72 -2.3 1,817,808 - SMc00317 0.72 -0.2 1,817,808 - SMc00317 0.72 +1.0 1,817,829 + SMc00317 0.74 +0.3 1,817,830 - SMc00317 0.74 -0.2 1,817,857 + SMc00317 0.77 +0.4 1,817,857 + SMc00317 0.77 -0.3 1,817,858 - SMc00317 0.77 +0.5 1,817,858 - SMc00317 0.77 +0.4 1,817,897 + SMc00317 0.81 -1.2 1,817,898 - SMc00317 0.81 +0.9 1,817,898 - SMc00317 0.81 +0.1 1,818,205 - +0.2 1,819,007 + -0.9 1,819,008 - +0.3 1,819,008 - -0.4 1,819,008 - -0.0 1,819,008 - -2.3 1,819,008 - +0.0
Or see this region's nucleotide sequence