Strain Fitness in Sinorhizobium meliloti 1021 around SMc00181

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00196 and SMc00181 are separated by 200 nucleotidesSMc00181 and SMc00180 are separated by 202 nucleotides SMc00196: SMc00196 - transporter, at 1,981,853 to 1,982,980 SMc00196 SMc00181: SMc00181 - hypothetical protein, at 1,983,181 to 1,983,441 SMc00181 SMc00180: SMc00180 - coproporphyrinogen III oxidase, at 1,983,644 to 1,984,555 SMc00180 Position (kb) 1983 1984Strain fitness (log2 ratio) -2 -1 0 1at 1982.362 kb on + strand, within SMc00196at 1982.363 kb on - strand, within SMc00196at 1982.751 kb on + strand, within SMc00196at 1982.848 kb on - strand, within SMc00196at 1982.910 kb on + strandat 1982.910 kb on + strandat 1983.121 kb on + strandat 1983.122 kb on - strandat 1983.122 kb on - strandat 1983.122 kb on - strandat 1983.264 kb on - strand, within SMc00181at 1983.430 kb on + strandat 1983.448 kb on + strandat 1983.448 kb on + strandat 1983.448 kb on + strandat 1983.466 kb on - strandat 1983.483 kb on - strandat 1983.483 kb on - strandat 1983.483 kb on - strandat 1983.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,982,362 + SMc00196 0.45 +0.4
1,982,363 - SMc00196 0.45 -0.3
1,982,751 + SMc00196 0.80 +0.8
1,982,848 - SMc00196 0.88 +1.0
1,982,910 + -1.1
1,982,910 + -2.2
1,983,121 + -0.4
1,983,122 - -0.1
1,983,122 - -0.6
1,983,122 - -0.9
1,983,264 - SMc00181 0.32 +0.4
1,983,430 + +0.1
1,983,448 + +0.0
1,983,448 + -1.2
1,983,448 + -0.3
1,983,466 - -0.2
1,983,483 - -2.2
1,983,483 - -0.9
1,983,483 - -0.6
1,983,574 + -0.3

Or see this region's nucleotide sequence