Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20849

Experiment: Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20848 and SM_b20849 overlap by 4 nucleotidesSM_b20849 and SM_b20850 are separated by 114 nucleotides SM_b20848: SM_b20848 - membrane protein, at 1,250,520 to 1,251,752 _b20848 SM_b20849: SM_b20849 - guanine deaminase, at 1,251,749 to 1,253,065 _b20849 SM_b20850: SM_b20850 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data), at 1,253,180 to 1,254,316 _b20850 Position (kb) 1251 1252 1253 1254Strain fitness (log2 ratio) -2 -1 0 1 2at 1250.779 kb on - strand, within SM_b20848at 1250.820 kb on + strand, within SM_b20848at 1250.820 kb on + strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.824 kb on - strand, within SM_b20848at 1250.849 kb on - strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.929 kb on - strand, within SM_b20848at 1250.929 kb on - strand, within SM_b20848at 1250.939 kb on - strand, within SM_b20848at 1250.996 kb on - strand, within SM_b20848at 1250.996 kb on - strand, within SM_b20848at 1251.018 kb on + strand, within SM_b20848at 1251.018 kb on + strand, within SM_b20848at 1251.019 kb on - strand, within SM_b20848at 1251.019 kb on - strand, within SM_b20848at 1251.020 kb on + strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.238 kb on + strand, within SM_b20848at 1251.558 kb on + strand, within SM_b20848at 1251.558 kb on + strand, within SM_b20848at 1251.636 kb on + strandat 1251.637 kb on - strandat 1251.637 kb on - strandat 1251.639 kb on - strandat 1251.679 kb on + strandat 1251.679 kb on + strandat 1251.680 kb on - strandat 1251.680 kb on - strandat 1251.680 kb on - strandat 1251.824 kb on + strandat 1251.824 kb on + strandat 1251.825 kb on - strandat 1251.888 kb on - strand, within SM_b20849at 1252.044 kb on - strand, within SM_b20849at 1252.044 kb on - strand, within SM_b20849at 1252.151 kb on + strand, within SM_b20849at 1252.151 kb on + strand, within SM_b20849at 1252.152 kb on - strand, within SM_b20849at 1252.152 kb on - strand, within SM_b20849at 1252.286 kb on + strand, within SM_b20849at 1252.286 kb on + strand, within SM_b20849at 1252.287 kb on - strand, within SM_b20849at 1252.346 kb on - strand, within SM_b20849at 1252.504 kb on + strand, within SM_b20849at 1252.505 kb on - strand, within SM_b20849at 1252.514 kb on + strand, within SM_b20849at 1252.736 kb on + strand, within SM_b20849at 1252.737 kb on - strand, within SM_b20849at 1252.767 kb on - strand, within SM_b20849at 1252.817 kb on + strand, within SM_b20849at 1252.817 kb on + strand, within SM_b20849at 1252.848 kb on + strand, within SM_b20849at 1253.118 kb on - strandat 1253.120 kb on + strandat 1253.121 kb on - strandat 1253.142 kb on + strandat 1253.199 kb on + strandat 1253.200 kb on - strandat 1253.253 kb on - strandat 1253.285 kb on + strandat 1253.286 kb on - strandat 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.678 kb on - strand, within SM_b20850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
remove
1,250,779 - SM_b20848 0.21 +0.0
1,250,820 + SM_b20848 0.24 -0.2
1,250,820 + SM_b20848 0.24 +0.3
1,250,821 - SM_b20848 0.24 +0.4
1,250,821 - SM_b20848 0.24 +1.6
1,250,821 - SM_b20848 0.24 -0.0
1,250,824 - SM_b20848 0.25 -0.8
1,250,849 - SM_b20848 0.27 -0.1
1,250,928 + SM_b20848 0.33 -0.4
1,250,928 + SM_b20848 0.33 -0.4
1,250,928 + SM_b20848 0.33 -0.7
1,250,929 - SM_b20848 0.33 -0.9
1,250,929 - SM_b20848 0.33 +0.3
1,250,939 - SM_b20848 0.34 -1.6
1,250,996 - SM_b20848 0.39 +0.5
1,250,996 - SM_b20848 0.39 +0.7
1,251,018 + SM_b20848 0.40 -0.4
1,251,018 + SM_b20848 0.40 +0.1
1,251,019 - SM_b20848 0.40 -1.8
1,251,019 - SM_b20848 0.40 -0.6
1,251,020 + SM_b20848 0.41 +0.7
1,251,208 - SM_b20848 0.56 +0.0
1,251,208 - SM_b20848 0.56 +0.7
1,251,208 - SM_b20848 0.56 +2.2
1,251,238 + SM_b20848 0.58 -0.1
1,251,558 + SM_b20848 0.84 +0.3
1,251,558 + SM_b20848 0.84 -1.2
1,251,636 + -0.0
1,251,637 - -1.0
1,251,637 - +0.0
1,251,639 - -0.4
1,251,679 + +0.0
1,251,679 + -0.1
1,251,680 - +0.1
1,251,680 - -0.3
1,251,680 - -0.1
1,251,824 + -0.2
1,251,824 + +0.5
1,251,825 - -0.2
1,251,888 - SM_b20849 0.11 -1.2
1,252,044 - SM_b20849 0.22 -0.2
1,252,044 - SM_b20849 0.22 -0.3
1,252,151 + SM_b20849 0.31 +0.5
1,252,151 + SM_b20849 0.31 -0.2
1,252,152 - SM_b20849 0.31 -0.6
1,252,152 - SM_b20849 0.31 -0.7
1,252,286 + SM_b20849 0.41 -0.5
1,252,286 + SM_b20849 0.41 -0.8
1,252,287 - SM_b20849 0.41 -0.2
1,252,346 - SM_b20849 0.45 -1.3
1,252,504 + SM_b20849 0.57 -1.3
1,252,505 - SM_b20849 0.57 -0.1
1,252,514 + SM_b20849 0.58 -0.4
1,252,736 + SM_b20849 0.75 -0.3
1,252,737 - SM_b20849 0.75 -1.2
1,252,767 - SM_b20849 0.77 -0.2
1,252,817 + SM_b20849 0.81 -0.7
1,252,817 + SM_b20849 0.81 -1.2
1,252,848 + SM_b20849 0.83 -0.4
1,253,118 - -0.3
1,253,120 + -0.1
1,253,121 - -0.1
1,253,142 + -0.0
1,253,199 + -0.8
1,253,200 - -0.2
1,253,253 - -0.7
1,253,285 + -0.2
1,253,286 - +1.0
1,253,567 + SM_b20850 0.34 +0.2
1,253,567 + SM_b20850 0.34 -0.6
1,253,567 + SM_b20850 0.34 +1.7
1,253,567 + SM_b20850 0.34 -0.3
1,253,567 + SM_b20850 0.34 +0.3
1,253,567 + SM_b20850 0.34 -1.2
1,253,568 - SM_b20850 0.34 -0.8
1,253,568 - SM_b20850 0.34 +0.0
1,253,568 - SM_b20850 0.34 -0.4
1,253,678 - SM_b20850 0.44 -0.1

Or see this region's nucleotide sequence