Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20848 and SM_b20849 overlap by 4 nucleotides SM_b20849 and SM_b20850 are separated by 114 nucleotides
SM_b20848: SM_b20848 - membrane protein, at 1,250,520 to 1,251,752
_b20848
SM_b20849: SM_b20849 - guanine deaminase, at 1,251,749 to 1,253,065
_b20849
SM_b20850: SM_b20850 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) , at 1,253,180 to 1,254,316
_b20850
Position (kb)
1251
1252
1253
1254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1250.779 kb on - strand, within SM_b20848 at 1250.820 kb on + strand, within SM_b20848 at 1250.820 kb on + strand, within SM_b20848 at 1250.821 kb on - strand, within SM_b20848 at 1250.821 kb on - strand, within SM_b20848 at 1250.821 kb on - strand, within SM_b20848 at 1250.824 kb on - strand, within SM_b20848 at 1250.849 kb on - strand, within SM_b20848 at 1250.928 kb on + strand, within SM_b20848 at 1250.928 kb on + strand, within SM_b20848 at 1250.928 kb on + strand, within SM_b20848 at 1250.929 kb on - strand, within SM_b20848 at 1250.929 kb on - strand, within SM_b20848 at 1250.939 kb on - strand, within SM_b20848 at 1250.996 kb on - strand, within SM_b20848 at 1250.996 kb on - strand, within SM_b20848 at 1251.018 kb on + strand, within SM_b20848 at 1251.018 kb on + strand, within SM_b20848 at 1251.019 kb on - strand, within SM_b20848 at 1251.019 kb on - strand, within SM_b20848 at 1251.020 kb on + strand, within SM_b20848 at 1251.208 kb on - strand, within SM_b20848 at 1251.208 kb on - strand, within SM_b20848 at 1251.208 kb on - strand, within SM_b20848 at 1251.238 kb on + strand, within SM_b20848 at 1251.558 kb on + strand, within SM_b20848 at 1251.558 kb on + strand, within SM_b20848 at 1251.636 kb on + strand at 1251.637 kb on - strand at 1251.637 kb on - strand at 1251.639 kb on - strand at 1251.679 kb on + strand at 1251.679 kb on + strand at 1251.680 kb on - strand at 1251.680 kb on - strand at 1251.680 kb on - strand at 1251.824 kb on + strand at 1251.824 kb on + strand at 1251.825 kb on - strand at 1251.888 kb on - strand, within SM_b20849 at 1252.044 kb on - strand, within SM_b20849 at 1252.044 kb on - strand, within SM_b20849 at 1252.151 kb on + strand, within SM_b20849 at 1252.151 kb on + strand, within SM_b20849 at 1252.152 kb on - strand, within SM_b20849 at 1252.152 kb on - strand, within SM_b20849 at 1252.286 kb on + strand, within SM_b20849 at 1252.286 kb on + strand, within SM_b20849 at 1252.287 kb on - strand, within SM_b20849 at 1252.346 kb on - strand, within SM_b20849 at 1252.504 kb on + strand, within SM_b20849 at 1252.505 kb on - strand, within SM_b20849 at 1252.514 kb on + strand, within SM_b20849 at 1252.736 kb on + strand, within SM_b20849 at 1252.737 kb on - strand, within SM_b20849 at 1252.767 kb on - strand, within SM_b20849 at 1252.817 kb on + strand, within SM_b20849 at 1252.817 kb on + strand, within SM_b20849 at 1252.848 kb on + strand, within SM_b20849 at 1253.118 kb on - strand at 1253.120 kb on + strand at 1253.121 kb on - strand at 1253.142 kb on + strand at 1253.199 kb on + strand at 1253.200 kb on - strand at 1253.253 kb on - strand at 1253.285 kb on + strand at 1253.286 kb on - strand at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.678 kb on - strand, within SM_b20850
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,250,779 - SM_b20848 0.21 +0.0 1,250,820 + SM_b20848 0.24 -0.2 1,250,820 + SM_b20848 0.24 +0.3 1,250,821 - SM_b20848 0.24 +0.4 1,250,821 - SM_b20848 0.24 +1.6 1,250,821 - SM_b20848 0.24 -0.0 1,250,824 - SM_b20848 0.25 -0.8 1,250,849 - SM_b20848 0.27 -0.1 1,250,928 + SM_b20848 0.33 -0.4 1,250,928 + SM_b20848 0.33 -0.4 1,250,928 + SM_b20848 0.33 -0.7 1,250,929 - SM_b20848 0.33 -0.9 1,250,929 - SM_b20848 0.33 +0.3 1,250,939 - SM_b20848 0.34 -1.6 1,250,996 - SM_b20848 0.39 +0.5 1,250,996 - SM_b20848 0.39 +0.7 1,251,018 + SM_b20848 0.40 -0.4 1,251,018 + SM_b20848 0.40 +0.1 1,251,019 - SM_b20848 0.40 -1.8 1,251,019 - SM_b20848 0.40 -0.6 1,251,020 + SM_b20848 0.41 +0.7 1,251,208 - SM_b20848 0.56 +0.0 1,251,208 - SM_b20848 0.56 +0.7 1,251,208 - SM_b20848 0.56 +2.2 1,251,238 + SM_b20848 0.58 -0.1 1,251,558 + SM_b20848 0.84 +0.3 1,251,558 + SM_b20848 0.84 -1.2 1,251,636 + -0.0 1,251,637 - -1.0 1,251,637 - +0.0 1,251,639 - -0.4 1,251,679 + +0.0 1,251,679 + -0.1 1,251,680 - +0.1 1,251,680 - -0.3 1,251,680 - -0.1 1,251,824 + -0.2 1,251,824 + +0.5 1,251,825 - -0.2 1,251,888 - SM_b20849 0.11 -1.2 1,252,044 - SM_b20849 0.22 -0.2 1,252,044 - SM_b20849 0.22 -0.3 1,252,151 + SM_b20849 0.31 +0.5 1,252,151 + SM_b20849 0.31 -0.2 1,252,152 - SM_b20849 0.31 -0.6 1,252,152 - SM_b20849 0.31 -0.7 1,252,286 + SM_b20849 0.41 -0.5 1,252,286 + SM_b20849 0.41 -0.8 1,252,287 - SM_b20849 0.41 -0.2 1,252,346 - SM_b20849 0.45 -1.3 1,252,504 + SM_b20849 0.57 -1.3 1,252,505 - SM_b20849 0.57 -0.1 1,252,514 + SM_b20849 0.58 -0.4 1,252,736 + SM_b20849 0.75 -0.3 1,252,737 - SM_b20849 0.75 -1.2 1,252,767 - SM_b20849 0.77 -0.2 1,252,817 + SM_b20849 0.81 -0.7 1,252,817 + SM_b20849 0.81 -1.2 1,252,848 + SM_b20849 0.83 -0.4 1,253,118 - -0.3 1,253,120 + -0.1 1,253,121 - -0.1 1,253,142 + -0.0 1,253,199 + -0.8 1,253,200 - -0.2 1,253,253 - -0.7 1,253,285 + -0.2 1,253,286 - +1.0 1,253,567 + SM_b20850 0.34 +0.2 1,253,567 + SM_b20850 0.34 -0.6 1,253,567 + SM_b20850 0.34 +1.7 1,253,567 + SM_b20850 0.34 -0.3 1,253,567 + SM_b20850 0.34 +0.3 1,253,567 + SM_b20850 0.34 -1.2 1,253,568 - SM_b20850 0.34 -0.8 1,253,568 - SM_b20850 0.34 +0.0 1,253,568 - SM_b20850 0.34 -0.4 1,253,678 - SM_b20850 0.44 -0.1
Or see this region's nucleotide sequence