Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24525 and RR42_RS24530 are separated by 106 nucleotides RR42_RS24530 and RR42_RS24535 are separated by 106 nucleotides RR42_RS24535 and RR42_RS24540 are separated by 5 nucleotides
RR42_RS24525: RR42_RS24525 - hypothetical protein, at 834,490 to 835,209
_RS24525
RR42_RS24530: RR42_RS24530 - hypothetical protein, at 835,316 to 836,113
_RS24530
RR42_RS24535: RR42_RS24535 - tRNA-Asn, at 836,220 to 836,301
_RS24535
RR42_RS24540: RR42_RS24540 - tRNA-Gly, at 836,307 to 836,382
_RS24540
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.574 kb on - strand, within RR42_RS24525 at 834.590 kb on + strand, within RR42_RS24525 at 834.590 kb on + strand, within RR42_RS24525 at 834.590 kb on + strand, within RR42_RS24525 at 834.590 kb on + strand, within RR42_RS24525 at 834.590 kb on + strand, within RR42_RS24525 at 834.627 kb on + strand, within RR42_RS24525 at 834.714 kb on + strand, within RR42_RS24525 at 834.803 kb on + strand, within RR42_RS24525 at 834.803 kb on + strand, within RR42_RS24525 at 834.803 kb on + strand, within RR42_RS24525 at 834.804 kb on - strand, within RR42_RS24525 at 834.804 kb on - strand, within RR42_RS24525 at 834.899 kb on + strand, within RR42_RS24525 at 834.899 kb on + strand, within RR42_RS24525 at 834.899 kb on + strand, within RR42_RS24525 at 834.900 kb on - strand, within RR42_RS24525 at 834.900 kb on - strand, within RR42_RS24525 at 834.909 kb on + strand, within RR42_RS24525 at 834.960 kb on + strand, within RR42_RS24525 at 834.960 kb on + strand, within RR42_RS24525 at 834.961 kb on - strand, within RR42_RS24525 at 834.980 kb on + strand, within RR42_RS24525 at 835.234 kb on - strand at 835.292 kb on - strand at 835.305 kb on + strand at 835.305 kb on + strand at 835.306 kb on - strand at 835.327 kb on + strand at 835.327 kb on + strand at 835.327 kb on + strand at 835.327 kb on + strand at 835.328 kb on - strand at 835.328 kb on - strand at 835.328 kb on - strand at 835.434 kb on + strand, within RR42_RS24530 at 835.434 kb on + strand, within RR42_RS24530 at 835.460 kb on - strand, within RR42_RS24530 at 835.460 kb on - strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.464 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.755 kb on + strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 836.203 kb on - strand at 836.207 kb on + strand at 836.261 kb on + strand, within RR42_RS24535 at 836.268 kb on + strand, within RR42_RS24535 at 836.305 kb on - strand at 836.315 kb on - strand, within RR42_RS24540 at 836.475 kb on + strand at 836.476 kb on - strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.498 kb on - strand at 836.568 kb on + strand at 836.569 kb on - strand at 836.569 kb on - strand at 836.620 kb on + strand at 836.620 kb on + strand at 836.673 kb on + strand at 836.730 kb on + strand at 836.732 kb on + strand at 836.733 kb on - strand at 836.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 834,574 - RR42_RS24525 0.12 -0.6 834,590 + RR42_RS24525 0.14 +1.4 834,590 + RR42_RS24525 0.14 -0.2 834,590 + RR42_RS24525 0.14 -0.4 834,590 + RR42_RS24525 0.14 +1.6 834,590 + RR42_RS24525 0.14 -1.6 834,627 + RR42_RS24525 0.19 +0.3 834,714 + RR42_RS24525 0.31 -0.2 834,803 + RR42_RS24525 0.43 +0.4 834,803 + RR42_RS24525 0.43 -1.1 834,803 + RR42_RS24525 0.43 +0.4 834,804 - RR42_RS24525 0.44 +0.9 834,804 - RR42_RS24525 0.44 -0.2 834,899 + RR42_RS24525 0.57 +0.7 834,899 + RR42_RS24525 0.57 -0.2 834,899 + RR42_RS24525 0.57 -0.5 834,900 - RR42_RS24525 0.57 +0.6 834,900 - RR42_RS24525 0.57 +0.6 834,909 + RR42_RS24525 0.58 -1.6 834,960 + RR42_RS24525 0.65 -0.9 834,960 + RR42_RS24525 0.65 -0.6 834,961 - RR42_RS24525 0.65 +0.4 834,980 + RR42_RS24525 0.68 +0.2 835,234 - +0.8 835,292 - +1.7 835,305 + -0.4 835,305 + +0.9 835,306 - +0.7 835,327 + -1.0 835,327 + +1.0 835,327 + -0.6 835,327 + +0.5 835,328 - +0.3 835,328 - +1.6 835,328 - +1.2 835,434 + RR42_RS24530 0.15 -0.1 835,434 + RR42_RS24530 0.15 -2.5 835,460 - RR42_RS24530 0.18 -0.8 835,460 - RR42_RS24530 0.18 +1.3 835,463 + RR42_RS24530 0.18 -0.1 835,463 + RR42_RS24530 0.18 +0.1 835,463 + RR42_RS24530 0.18 +0.4 835,463 + RR42_RS24530 0.18 +0.8 835,464 - RR42_RS24530 0.19 -0.1 835,552 - RR42_RS24530 0.30 +1.4 835,552 - RR42_RS24530 0.30 +0.3 835,552 - RR42_RS24530 0.30 +0.2 835,552 - RR42_RS24530 0.30 +2.6 835,552 - RR42_RS24530 0.30 -1.3 835,755 + RR42_RS24530 0.55 -0.3 835,756 - RR42_RS24530 0.55 +0.2 835,756 - RR42_RS24530 0.55 +1.1 835,756 - RR42_RS24530 0.55 +0.6 835,936 - RR42_RS24530 0.78 +1.3 835,936 - RR42_RS24530 0.78 -2.2 835,936 - RR42_RS24530 0.78 -0.1 835,936 - RR42_RS24530 0.78 +0.3 835,975 - RR42_RS24530 0.83 +1.0 835,975 - RR42_RS24530 0.83 +0.6 835,975 - RR42_RS24530 0.83 +0.5 836,203 - -0.1 836,207 + -0.4 836,261 + RR42_RS24535 0.50 -0.7 836,268 + RR42_RS24535 0.59 +0.2 836,305 - -0.6 836,315 - RR42_RS24540 0.11 +0.7 836,475 + +0.3 836,476 - -0.3 836,497 + +0.2 836,497 + -0.3 836,497 + -0.4 836,497 + -0.4 836,497 + -0.6 836,498 - -0.1 836,568 + -2.0 836,569 - -1.2 836,569 - -1.0 836,620 + -0.1 836,620 + -0.2 836,673 + +0.2 836,730 + +0.2 836,732 + -0.4 836,733 - +0.5 836,941 - +0.2
Or see this region's nucleotide sequence