Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21335 and RR42_RS21340 are separated by 194 nucleotides RR42_RS21340 and RR42_RS21345 are separated by 192 nucleotides
RR42_RS21335: RR42_RS21335 - FAD-linked oxidase, at 113,876 to 115,306
_RS21335
RR42_RS21340: RR42_RS21340 - DNA-binding protein, at 115,501 to 117,084
_RS21340
RR42_RS21345: RR42_RS21345 - acetylornithine deacetylase, at 117,277 to 118,626
_RS21345
Position (kb) 115
116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 114.591 kb on + strand, within RR42_RS21335 at 114.592 kb on - strand, within RR42_RS21335 at 114.848 kb on - strand, within RR42_RS21335 at 115.133 kb on - strand, within RR42_RS21335 at 115.183 kb on - strand at 115.335 kb on + strand at 115.335 kb on + strand at 115.336 kb on - strand at 115.341 kb on + strand at 115.341 kb on + strand at 115.357 kb on + strand at 115.649 kb on + strand at 115.649 kb on + strand at 115.927 kb on - strand, within RR42_RS21340 at 116.075 kb on + strand, within RR42_RS21340 at 116.075 kb on + strand, within RR42_RS21340 at 116.075 kb on + strand, within RR42_RS21340 at 116.076 kb on - strand, within RR42_RS21340 at 116.076 kb on - strand, within RR42_RS21340 at 116.076 kb on - strand, within RR42_RS21340 at 116.076 kb on - strand, within RR42_RS21340 at 116.151 kb on - strand, within RR42_RS21340 at 116.190 kb on - strand, within RR42_RS21340 at 116.266 kb on - strand, within RR42_RS21340 at 116.379 kb on - strand, within RR42_RS21340 at 116.379 kb on - strand, within RR42_RS21340 at 116.544 kb on - strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.802 kb on + strand, within RR42_RS21340 at 116.803 kb on - strand, within RR42_RS21340 at 116.858 kb on + strand, within RR42_RS21340 at 116.915 kb on - strand, within RR42_RS21340 at 116.999 kb on + strand at 117.000 kb on - strand at 117.132 kb on + strand at 117.132 kb on + strand at 117.136 kb on + strand at 117.136 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.295 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.313 kb on - strand at 117.376 kb on + strand at 117.376 kb on + strand at 117.387 kb on + strand at 117.496 kb on + strand, within RR42_RS21345 at 117.565 kb on + strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.679 kb on + strand, within RR42_RS21345 at 117.764 kb on - strand, within RR42_RS21345 at 117.765 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.016 kb on - strand, within RR42_RS21345
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 114,591 + RR42_RS21335 0.50 -0.4 114,592 - RR42_RS21335 0.50 -0.6 114,848 - RR42_RS21335 0.68 +0.6 115,133 - RR42_RS21335 0.88 -1.3 115,183 - +0.3 115,335 + -1.8 115,335 + -0.2 115,336 - -0.1 115,341 + +0.4 115,341 + +0.1 115,357 + -0.9 115,649 + +0.4 115,649 + +0.1 115,927 - RR42_RS21340 0.27 -0.4 116,075 + RR42_RS21340 0.36 +1.1 116,075 + RR42_RS21340 0.36 +0.1 116,075 + RR42_RS21340 0.36 +0.1 116,076 - RR42_RS21340 0.36 +0.4 116,076 - RR42_RS21340 0.36 -0.4 116,076 - RR42_RS21340 0.36 -1.6 116,076 - RR42_RS21340 0.36 -0.1 116,151 - RR42_RS21340 0.41 +0.3 116,190 - RR42_RS21340 0.43 -0.2 116,266 - RR42_RS21340 0.48 +0.1 116,379 - RR42_RS21340 0.55 +0.5 116,379 - RR42_RS21340 0.55 -0.3 116,544 - RR42_RS21340 0.66 -0.4 116,561 + RR42_RS21340 0.67 +0.3 116,561 + RR42_RS21340 0.67 +0.3 116,561 + RR42_RS21340 0.67 +0.9 116,561 + RR42_RS21340 0.67 -0.3 116,562 - RR42_RS21340 0.67 +0.1 116,562 - RR42_RS21340 0.67 -0.0 116,802 + RR42_RS21340 0.82 -0.8 116,803 - RR42_RS21340 0.82 -3.5 116,858 + RR42_RS21340 0.86 -0.1 116,915 - RR42_RS21340 0.89 +0.4 116,999 + +0.4 117,000 - +0.2 117,132 + -0.4 117,132 + +0.9 117,136 + +0.2 117,136 + +0.4 117,276 + -3.0 117,276 + -0.3 117,276 + +0.1 117,277 - +1.9 117,277 - -0.4 117,277 - +0.4 117,277 - -0.2 117,295 - -0.7 117,304 - -0.6 117,304 - -0.0 117,304 - +0.1 117,313 - -1.0 117,376 + -0.3 117,376 + +1.8 117,387 + -0.2 117,496 + RR42_RS21345 0.16 -0.2 117,565 + RR42_RS21345 0.21 -0.3 117,566 - RR42_RS21345 0.21 -0.6 117,566 - RR42_RS21345 0.21 +1.6 117,566 - RR42_RS21345 0.21 +1.1 117,679 + RR42_RS21345 0.30 +0.1 117,764 - RR42_RS21345 0.36 -0.4 117,765 + RR42_RS21345 0.36 +1.2 118,015 + RR42_RS21345 0.55 +0.3 118,015 + RR42_RS21345 0.55 +0.6 118,015 + RR42_RS21345 0.55 -0.2 118,016 - RR42_RS21345 0.55 -0.3
Or see this region's nucleotide sequence