Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17425

Experiment: L-Phenylalanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine (C)
3,771,177	-				+0.5
3,771,255	+		RR42_RS17420	0.14	+0.2
3,771,256	-		RR42_RS17420	0.15	+0.7
3,771,515	+		RR42_RS17420	0.40	-0.2
3,771,515	+		RR42_RS17420	0.40	+1.2
3,771,578	+		RR42_RS17420	0.47	-0.0
3,771,578	+		RR42_RS17420	0.47	+0.4
3,771,578	+		RR42_RS17420	0.47	-0.4
3,771,579	-		RR42_RS17420	0.47	+0.3
3,771,579	-		RR42_RS17420	0.47	-1.3
3,771,579	-		RR42_RS17420	0.47	-2.1
3,771,579	-		RR42_RS17420	0.47	-0.4
3,771,579	-		RR42_RS17420	0.47	-0.1
3,771,783	+		RR42_RS17420	0.67	+0.0
3,771,783	+		RR42_RS17420	0.67	+0.8
3,771,783	+		RR42_RS17420	0.67	-3.2
3,771,784	-		RR42_RS17420	0.67	-0.6
3,771,784	-		RR42_RS17420	0.67	-0.1
3,771,784	-		RR42_RS17420	0.67	-0.1
3,771,785	+		RR42_RS17420	0.67	+1.3
3,771,785	+		RR42_RS17420	0.67	-0.2
3,771,786	-		RR42_RS17420	0.67	-0.7
3,771,786	-		RR42_RS17420	0.67	+1.3
3,771,786	-		RR42_RS17420	0.67	-0.5
3,771,786	-		RR42_RS17420	0.67	+0.4
3,771,822	+		RR42_RS17420	0.71	+0.7
3,771,839	+		RR42_RS17420	0.72	-0.0
3,771,866	+		RR42_RS17420	0.75	-0.6
3,771,866	+		RR42_RS17420	0.75	-0.1
3,771,867	-		RR42_RS17420	0.75	-0.4
3,771,867	-		RR42_RS17420	0.75	+1.3
3,771,867	-		RR42_RS17420	0.75	-0.1
3,771,867	-		RR42_RS17420	0.75	+1.0
3,771,867	-		RR42_RS17420	0.75	-1.5
3,771,867	-		RR42_RS17420	0.75	+0.9
3,771,867	-		RR42_RS17420	0.75	-0.2
3,771,867	-		RR42_RS17420	0.75	+0.1
3,771,867	-		RR42_RS17420	0.75	-0.1
3,772,040	+				-0.4
3,772,041	-				+0.3
3,772,041	-				+1.4
3,772,127	+				-0.3
3,772,127	+				+0.2
3,772,145	+				+1.2
3,772,173	-				-0.0
3,772,187	+				+1.1
3,772,188	-				+0.9
3,772,188	-				+0.0
3,772,188	-				+0.5
3,772,188	-				+1.4
3,772,503	+		RR42_RS17425	0.34	+0.1
3,772,504	-		RR42_RS17425	0.34	+0.4
3,772,534	+		RR42_RS17425	0.37	+0.6
3,772,534	+		RR42_RS17425	0.37	+2.0
3,772,534	+		RR42_RS17425	0.37	+0.5
3,772,535	-		RR42_RS17425	0.37	+0.3
3,772,660	+		RR42_RS17425	0.48	+0.8
3,772,660	+		RR42_RS17425	0.48	-0.1
3,772,661	-		RR42_RS17425	0.48	+0.4
3,772,723	+		RR42_RS17425	0.54	+0.9
3,772,723	+		RR42_RS17425	0.54	+0.9
3,772,723	+		RR42_RS17425	0.54	+0.1
3,772,723	+		RR42_RS17425	0.54	+1.1
3,772,724	-		RR42_RS17425	0.54	+1.1
3,772,724	-		RR42_RS17425	0.54	+0.6
3,772,943	+		RR42_RS17425	0.73	+0.9
3,772,999	-		RR42_RS17425	0.78	+0.1
3,772,999	-		RR42_RS17425	0.78	+1.5
3,772,999	-		RR42_RS17425	0.78	-1.0
3,773,152	+				+1.5
3,773,152	+				+3.8
3,773,152	+				+2.2
3,773,153	-				+0.6
3,773,153	-				+0.8
3,773,179	+				-1.4
3,773,179	+				+0.4
3,773,180	-				+0.2
3,773,180	-				+1.3
3,773,209	+				+0.6
3,773,209	+				+0.3
3,773,209	+				-0.0
3,773,210	-				-0.2
3,773,219	+				+0.5
3,773,345	-				+0.5
3,773,348	+				-0.1
3,773,348	+				+2.2
3,773,349	-				-0.5
3,773,499	+		RR42_RS17430	0.18	+0.2
3,773,499	+		RR42_RS17430	0.18	+0.4
3,773,500	-		RR42_RS17430	0.18	+0.8
3,773,500	-		RR42_RS17430	0.18	-1.4
3,774,059	+		RR42_RS17430	0.60	+1.1
3,774,059	+		RR42_RS17430	0.60	-0.1
3,774,060	-		RR42_RS17430	0.61	+0.7
3,774,060	-		RR42_RS17430	0.61	-0.6
3,774,060	-		RR42_RS17430	0.61	-0.8
3,774,063	+		RR42_RS17430	0.61	+0.1
3,774,063	+		RR42_RS17430	0.61	-0.4
3,774,063	+		RR42_RS17430	0.61	+0.5
3,774,063	+		RR42_RS17430	0.61	+0.0
3,774,063	+		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	+1.1
3,774,063	+		RR42_RS17430	0.61	+0.5
3,774,063	+		RR42_RS17430	0.61	+1.9
3,774,063	+		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	+0.8
3,774,063	+		RR42_RS17430	0.61	+0.9
3,774,063	+		RR42_RS17430	0.61	-1.2
3,774,063	+		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	-0.1
3,774,064	-		RR42_RS17430	0.61	+0.6
3,774,064	-		RR42_RS17430	0.61	+0.1
3,774,064	-		RR42_RS17430	0.61	+0.2
3,774,064	-		RR42_RS17430	0.61	+1.0
3,774,064	-		RR42_RS17430	0.61	+0.2
3,774,064	-		RR42_RS17430	0.61	-0.9
3,774,065	+		RR42_RS17430	0.61	+0.7
3,774,065	+		RR42_RS17430	0.61	+0.1
3,774,065	+		RR42_RS17430	0.61	+1.6
3,774,065	+		RR42_RS17430	0.61	+0.7
3,774,065	+		RR42_RS17430	0.61	+0.5
3,774,065	+		RR42_RS17430	0.61	+1.2
3,774,066	-		RR42_RS17430	0.61	-0.4
3,774,066	-		RR42_RS17430	0.61	-0.0
3,774,066	-		RR42_RS17430	0.61	+1.5
3,774,066	-		RR42_RS17430	0.61	+1.0
3,774,066	-		RR42_RS17430	0.61	-2.6
3,774,066	-		RR42_RS17430	0.61	+0.2
3,774,067	+		RR42_RS17430	0.61	+0.4
3,774,067	+		RR42_RS17430	0.61	+0.9
3,774,067	+		RR42_RS17430	0.61	+0.9
3,774,067	+		RR42_RS17430	0.61	+0.4
3,774,067	+		RR42_RS17430	0.61	+0.8
3,774,067	+		RR42_RS17430	0.61	+1.7
3,774,067	+		RR42_RS17430	0.61	-0.0
3,774,068	-		RR42_RS17430	0.61	-0.2
3,774,068	-		RR42_RS17430	0.61	+0.5
3,774,068	-		RR42_RS17430	0.61	+0.3
3,774,068	-		RR42_RS17430	0.61	+0.5
3,774,068	-		RR42_RS17430	0.61	+0.1
3,774,068	-		RR42_RS17430	0.61	+1.4
3,774,068	-		RR42_RS17430	0.61	-0.3
3,774,068	-		RR42_RS17430	0.61	+0.2
3,774,068	-		RR42_RS17430	0.61	+0.6
3,774,068	-		RR42_RS17430	0.61	-0.8
3,774,068	-		RR42_RS17430	0.61	-0.6
3,774,068	-		RR42_RS17430	0.61	-0.1
3,774,114	+		RR42_RS17430	0.65	-0.1
3,774,114	+		RR42_RS17430	0.65	-0.1
3,774,167	+		RR42_RS17430	0.69	-0.8
3,774,167	+		RR42_RS17430	0.69	+1.0
3,774,168	-		RR42_RS17430	0.69	+0.1
3,774,176	+		RR42_RS17430	0.69	+0.0
3,774,176	+		RR42_RS17430	0.69	+1.9
3,774,176	+		RR42_RS17430	0.69	+0.4
3,774,176	+		RR42_RS17430	0.69	+0.5
3,774,177	-		RR42_RS17430	0.69	+0.5