Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02300 and RR42_RS02305 are separated by 284 nucleotides RR42_RS02305 and RR42_RS02310 are separated by 78 nucleotides RR42_RS02310 and RR42_RS02315 are separated by 15 nucleotides
RR42_RS02300: RR42_RS02300 - hypothetical protein, at 515,131 to 515,802
_RS02300
RR42_RS02305: RR42_RS02305 - porin, at 516,087 to 517,421
_RS02305
RR42_RS02310: RR42_RS02310 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 517,500 to 518,333
_RS02310
RR42_RS02315: RR42_RS02315 - threonine dehydratase, at 518,349 to 519,875
_RS02315
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1 at 515.232 kb on + strand, within RR42_RS02300 at 515.232 kb on + strand, within RR42_RS02300 at 515.232 kb on + strand, within RR42_RS02300 at 515.232 kb on + strand, within RR42_RS02300 at 515.233 kb on - strand, within RR42_RS02300 at 515.233 kb on - strand, within RR42_RS02300 at 515.233 kb on - strand, within RR42_RS02300 at 515.233 kb on - strand, within RR42_RS02300 at 515.241 kb on + strand, within RR42_RS02300 at 515.606 kb on + strand, within RR42_RS02300 at 515.607 kb on - strand, within RR42_RS02300 at 515.607 kb on - strand, within RR42_RS02300 at 515.609 kb on + strand, within RR42_RS02300 at 515.609 kb on + strand, within RR42_RS02300 at 515.609 kb on + strand, within RR42_RS02300 at 515.610 kb on - strand, within RR42_RS02300 at 515.610 kb on - strand, within RR42_RS02300 at 515.824 kb on + strand at 515.843 kb on - strand at 515.897 kb on - strand at 515.922 kb on + strand at 515.923 kb on - strand at 515.923 kb on - strand at 515.933 kb on + strand at 515.933 kb on + strand at 515.933 kb on + strand at 515.934 kb on - strand at 515.934 kb on - strand at 515.945 kb on + strand at 515.946 kb on - strand at 515.946 kb on - strand at 516.216 kb on + strand at 516.216 kb on + strand at 516.216 kb on + strand at 516.216 kb on + strand at 516.216 kb on + strand at 516.217 kb on - strand at 516.217 kb on - strand at 516.217 kb on - strand at 516.217 kb on - strand at 516.218 kb on + strand at 516.218 kb on + strand at 516.218 kb on + strand at 516.219 kb on - strand at 516.219 kb on - strand at 516.219 kb on - strand at 516.294 kb on + strand, within RR42_RS02305 at 516.295 kb on - strand, within RR42_RS02305 at 516.295 kb on - strand, within RR42_RS02305 at 516.295 kb on - strand, within RR42_RS02305 at 516.436 kb on + strand, within RR42_RS02305 at 516.618 kb on + strand, within RR42_RS02305 at 516.618 kb on + strand, within RR42_RS02305 at 516.702 kb on + strand, within RR42_RS02305 at 516.726 kb on + strand, within RR42_RS02305 at 516.726 kb on + strand, within RR42_RS02305 at 516.726 kb on + strand, within RR42_RS02305 at 516.820 kb on - strand, within RR42_RS02305 at 516.850 kb on - strand, within RR42_RS02305 at 516.850 kb on - strand, within RR42_RS02305 at 517.062 kb on - strand, within RR42_RS02305 at 517.062 kb on - strand, within RR42_RS02305 at 517.086 kb on + strand, within RR42_RS02305 at 517.087 kb on - strand, within RR42_RS02305 at 517.190 kb on + strand, within RR42_RS02305 at 517.191 kb on - strand, within RR42_RS02305 at 517.191 kb on - strand, within RR42_RS02305 at 517.215 kb on + strand, within RR42_RS02305 at 517.215 kb on + strand, within RR42_RS02305 at 517.215 kb on + strand, within RR42_RS02305 at 517.216 kb on - strand, within RR42_RS02305 at 517.266 kb on + strand, within RR42_RS02305 at 517.266 kb on + strand, within RR42_RS02305 at 517.267 kb on - strand, within RR42_RS02305 at 517.267 kb on - strand, within RR42_RS02305 at 517.296 kb on + strand at 517.296 kb on + strand at 517.317 kb on + strand at 517.317 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.445 kb on + strand at 517.587 kb on - strand, within RR42_RS02310 at 517.700 kb on - strand, within RR42_RS02310 at 517.705 kb on - strand, within RR42_RS02310 at 517.870 kb on + strand, within RR42_RS02310 at 517.870 kb on + strand, within RR42_RS02310 at 517.871 kb on - strand, within RR42_RS02310 at 518.369 kb on - strand at 518.369 kb on - strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.398 kb on - strand at 518.398 kb on - strand at 518.402 kb on - strand at 518.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 515,232 + RR42_RS02300 0.15 +0.3 515,232 + RR42_RS02300 0.15 +0.1 515,232 + RR42_RS02300 0.15 +0.4 515,232 + RR42_RS02300 0.15 +0.3 515,233 - RR42_RS02300 0.15 +0.1 515,233 - RR42_RS02300 0.15 +0.0 515,233 - RR42_RS02300 0.15 -0.3 515,233 - RR42_RS02300 0.15 +0.0 515,241 + RR42_RS02300 0.16 -0.6 515,606 + RR42_RS02300 0.71 +0.4 515,607 - RR42_RS02300 0.71 +0.3 515,607 - RR42_RS02300 0.71 +0.3 515,609 + RR42_RS02300 0.71 +0.6 515,609 + RR42_RS02300 0.71 -0.0 515,609 + RR42_RS02300 0.71 +0.8 515,610 - RR42_RS02300 0.71 +0.2 515,610 - RR42_RS02300 0.71 -0.0 515,824 + -2.6 515,843 - -1.1 515,897 - -1.0 515,922 + +0.3 515,923 - +0.5 515,923 - +0.5 515,933 + +0.7 515,933 + -0.4 515,933 + +0.3 515,934 - +0.3 515,934 - -1.2 515,945 + +0.1 515,946 - +0.0 515,946 - -1.2 516,216 + +0.5 516,216 + -0.7 516,216 + +0.2 516,216 + -0.3 516,216 + -0.1 516,217 - -0.4 516,217 - +0.8 516,217 - +0.8 516,217 - +0.6 516,218 + +0.7 516,218 + -1.7 516,218 + +0.2 516,219 - -0.3 516,219 - -0.1 516,219 - -1.2 516,294 + RR42_RS02305 0.16 +0.4 516,295 - RR42_RS02305 0.16 -0.3 516,295 - RR42_RS02305 0.16 +0.3 516,295 - RR42_RS02305 0.16 +0.1 516,436 + RR42_RS02305 0.26 +0.4 516,618 + RR42_RS02305 0.40 -0.5 516,618 + RR42_RS02305 0.40 -0.1 516,702 + RR42_RS02305 0.46 -0.5 516,726 + RR42_RS02305 0.48 -0.2 516,726 + RR42_RS02305 0.48 -0.1 516,726 + RR42_RS02305 0.48 +0.6 516,820 - RR42_RS02305 0.55 -0.3 516,850 - RR42_RS02305 0.57 +0.1 516,850 - RR42_RS02305 0.57 -0.5 517,062 - RR42_RS02305 0.73 +1.2 517,062 - RR42_RS02305 0.73 -0.1 517,086 + RR42_RS02305 0.75 -0.4 517,087 - RR42_RS02305 0.75 -1.0 517,190 + RR42_RS02305 0.83 +0.7 517,191 - RR42_RS02305 0.83 -0.8 517,191 - RR42_RS02305 0.83 +0.4 517,215 + RR42_RS02305 0.84 +0.1 517,215 + RR42_RS02305 0.84 -0.6 517,215 + RR42_RS02305 0.84 -0.6 517,216 - RR42_RS02305 0.85 +0.5 517,266 + RR42_RS02305 0.88 -0.3 517,266 + RR42_RS02305 0.88 +0.1 517,267 - RR42_RS02305 0.88 +0.3 517,267 - RR42_RS02305 0.88 +0.6 517,296 + +0.3 517,296 + -0.8 517,317 + +0.3 517,317 + -2.2 517,344 + -0.3 517,344 + +0.3 517,445 + +0.0 517,587 - RR42_RS02310 0.10 -1.2 517,700 - RR42_RS02310 0.24 -2.3 517,705 - RR42_RS02310 0.25 -1.2 517,870 + RR42_RS02310 0.44 -1.2 517,870 + RR42_RS02310 0.44 -1.2 517,871 - RR42_RS02310 0.44 -0.7 518,369 - +0.3 518,369 - +0.2 518,397 + +0.9 518,397 + -0.1 518,397 + -1.0 518,398 - -0.5 518,398 - +1.4 518,402 - -0.4 518,402 - +0.0
Or see this region's nucleotide sequence