Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16765

Experiment: R2A with Manganese (II) chloride tetrahydrate 6.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 6.25 mM
3,673,375	+		LRK54_RS16760	0.29	+0.0
3,673,375	+		LRK54_RS16760	0.29	+0.6
3,673,376	-		LRK54_RS16760	0.29	-1.9
3,673,376	-		LRK54_RS16760	0.29	+1.8
3,673,376	-		LRK54_RS16760	0.29	-0.6
3,673,376	-		LRK54_RS16760	0.29	+2.4
3,673,680	+		LRK54_RS16760	0.60	+1.9
3,673,680	+		LRK54_RS16760	0.60	+1.1
3,673,680	+		LRK54_RS16760	0.60	-2.1
3,673,680	+		LRK54_RS16760	0.60	-1.6
3,673,702	+		LRK54_RS16760	0.62	+0.5
3,673,702	+		LRK54_RS16760	0.62	-0.2
3,673,702	+		LRK54_RS16760	0.62	-0.1
3,673,702	+		LRK54_RS16760	0.62	-0.8
3,673,702	+		LRK54_RS16760	0.62	-1.2
3,673,702	+		LRK54_RS16760	0.62	-2.5
3,673,702	+		LRK54_RS16760	0.62	+0.0
3,673,703	-		LRK54_RS16760	0.62	+0.0
3,673,703	-		LRK54_RS16760	0.62	+2.0
3,673,703	-		LRK54_RS16760	0.62	-0.8
3,673,703	-		LRK54_RS16760	0.62	+0.1
3,673,703	-		LRK54_RS16760	0.62	+0.4
3,673,703	-		LRK54_RS16760	0.62	-0.5
3,673,703	-		LRK54_RS16760	0.62	+1.6
3,673,703	-		LRK54_RS16760	0.62	-1.2
3,673,708	+		LRK54_RS16760	0.62	+0.1
3,673,708	+		LRK54_RS16760	0.62	+2.6
3,673,708	+		LRK54_RS16760	0.62	+1.4
3,673,709	-		LRK54_RS16760	0.63	-0.6
3,673,709	-		LRK54_RS16760	0.63	-1.3
3,673,709	-		LRK54_RS16760	0.63	-0.6
3,673,709	-		LRK54_RS16760	0.63	-0.6
3,673,709	-		LRK54_RS16760	0.63	+0.7
3,673,709	-		LRK54_RS16760	0.63	-1.1
3,673,709	-		LRK54_RS16760	0.63	+0.8
3,673,744	+		LRK54_RS16760	0.66	+0.4
3,673,744	+		LRK54_RS16760	0.66	+0.9
3,673,744	+		LRK54_RS16760	0.66	+0.4
3,673,744	+		LRK54_RS16760	0.66	-1.0
3,673,745	-		LRK54_RS16760	0.66	+0.3
3,673,785	+		LRK54_RS16760	0.70	-0.8
3,673,786	-		LRK54_RS16760	0.70	+0.1
3,673,786	-		LRK54_RS16760	0.70	-0.0
3,673,786	-		LRK54_RS16760	0.70	+1.4
3,673,786	-		LRK54_RS16760	0.70	+0.7
3,673,804	+		LRK54_RS16760	0.72	-1.8
3,673,804	+		LRK54_RS16760	0.72	-0.9
3,673,804	+		LRK54_RS16760	0.72	-0.8
3,673,804	+		LRK54_RS16760	0.72	-0.8
3,673,804	+		LRK54_RS16760	0.72	-0.1
3,673,805	-		LRK54_RS16760	0.72	+0.2
3,673,805	-		LRK54_RS16760	0.72	-0.3
3,673,949	-		LRK54_RS16760	0.87	+0.6
3,673,949	-		LRK54_RS16760	0.87	-1.3
3,673,949	-		LRK54_RS16760	0.87	+0.2
3,673,972	+		LRK54_RS16760	0.89	+0.2
3,673,972	+		LRK54_RS16760	0.89	-0.4
3,673,972	+		LRK54_RS16760	0.89	-1.4
3,673,972	+		LRK54_RS16760	0.89	-1.5
3,673,972	+		LRK54_RS16760	0.89	+0.5
3,673,972	+		LRK54_RS16760	0.89	-0.8
3,673,972	+		LRK54_RS16760	0.89	+0.7
3,673,972	+		LRK54_RS16760	0.89	-0.3
3,673,972	+		LRK54_RS16760	0.89	-0.5
3,673,972	+		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	+1.0
3,673,973	-		LRK54_RS16760	0.89	-0.1
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	-0.8
3,673,973	-		LRK54_RS16760	0.89	-0.3
3,673,973	-		LRK54_RS16760	0.89	+1.0
3,673,973	-		LRK54_RS16760	0.89	+0.9
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	+0.1
3,673,973	-		LRK54_RS16760	0.89	+0.2
3,673,973	-		LRK54_RS16760	0.89	-0.8
3,673,973	-		LRK54_RS16760	0.89	-1.4
3,673,973	-		LRK54_RS16760	0.89	-0.1
3,673,973	-		LRK54_RS16760	0.89	+1.1
3,673,973	-		LRK54_RS16760	0.89	-1.4
3,673,973	-		LRK54_RS16760	0.89	-0.3
3,674,032	+				-2.2
3,674,032	+				+0.5
3,674,032	+				+1.1
3,674,032	+				-1.0
3,674,032	+				-0.2
3,674,032	+				+0.6
3,674,032	+				+0.8
3,674,032	+				+1.1
3,674,032	+				-1.9
3,674,032	+				+0.0
3,674,033	-				-0.6
3,674,033	-				+0.1
3,674,033	-				+0.7
3,674,033	-				+1.2
3,674,033	-				+0.2
3,674,033	-				+0.1
3,674,033	-				+1.1
3,674,260	-				-0.0
3,674,260	-				-1.4
3,674,260	-				+1.0
3,674,260	-				-1.3
3,674,278	+				+0.3
3,674,278	+				-1.3
3,674,279	-				-0.0
3,674,279	-				+0.1
3,674,279	-				+0.3
3,674,315	+				+0.2
3,674,316	-				+0.7
3,674,316	-				+0.2
3,674,433	-		LRK54_RS16765	0.19	+1.1
3,674,547	+		LRK54_RS16765	0.34	+0.1
3,674,547	+		LRK54_RS16765	0.34	+0.1
3,674,547	+		LRK54_RS16765	0.34	-0.5
3,674,547	+		LRK54_RS16765	0.34	+1.4
3,674,547	+		LRK54_RS16765	0.34	+1.2
3,674,547	+		LRK54_RS16765	0.34	+1.5
3,674,547	+		LRK54_RS16765	0.34	-0.5
3,674,547	+		LRK54_RS16765	0.34	-0.6
3,674,548	-		LRK54_RS16765	0.34	+0.6
3,674,548	-		LRK54_RS16765	0.34	-0.4
3,674,548	-		LRK54_RS16765	0.34	+0.3
3,674,548	-		LRK54_RS16765	0.34	-0.4
3,674,548	-		LRK54_RS16765	0.34	-0.3
3,674,548	-		LRK54_RS16765	0.34	-0.2
3,674,548	-		LRK54_RS16765	0.34	+1.0
3,674,548	-		LRK54_RS16765	0.34	+0.8
3,674,548	-		LRK54_RS16765	0.34	+0.8
3,674,548	-		LRK54_RS16765	0.34	+0.4
3,674,548	-		LRK54_RS16765	0.34	+1.1
3,674,548	-		LRK54_RS16765	0.34	+0.1
3,674,548	-		LRK54_RS16765	0.34	-1.1
3,674,548	-		LRK54_RS16765	0.34	+0.3
3,674,564	+		LRK54_RS16765	0.36	-0.1
3,674,564	+		LRK54_RS16765	0.36	-0.4
3,674,564	+		LRK54_RS16765	0.36	-0.4
3,674,564	+		LRK54_RS16765	0.36	-0.2
3,674,564	+		LRK54_RS16765	0.36	+1.5
3,674,564	+		LRK54_RS16765	0.36	+0.4
3,674,564	+		LRK54_RS16765	0.36	-1.9
3,674,564	+		LRK54_RS16765	0.36	+2.2
3,674,564	+		LRK54_RS16765	0.36	+1.2
3,674,565	-		LRK54_RS16765	0.37	+0.5
3,674,565	-		LRK54_RS16765	0.37	-1.4
3,674,565	-		LRK54_RS16765	0.37	+0.3
3,674,565	-		LRK54_RS16765	0.37	-0.1
3,674,565	-		LRK54_RS16765	0.37	+0.5
3,674,565	-		LRK54_RS16765	0.37	+1.4
3,674,665	+		LRK54_RS16765	0.50	-0.3
3,674,666	-		LRK54_RS16765	0.50	+0.4
3,674,666	-		LRK54_RS16765	0.50	-0.4
3,674,666	-		LRK54_RS16765	0.50	-1.5
3,674,666	-		LRK54_RS16765	0.50	-0.8
3,674,666	-		LRK54_RS16765	0.50	-0.8
3,674,697	+		LRK54_RS16765	0.54	-0.0
3,674,697	+		LRK54_RS16765	0.54	+0.1
3,674,697	+		LRK54_RS16765	0.54	+0.7
3,674,697	+		LRK54_RS16765	0.54	-0.9
3,674,697	+		LRK54_RS16765	0.54	+0.1
3,674,697	+		LRK54_RS16765	0.54	+0.2
3,674,697	+		LRK54_RS16765	0.54	+0.0
3,674,697	+		LRK54_RS16765	0.54	+1.0
3,674,698	-		LRK54_RS16765	0.54	-0.4
3,674,698	-		LRK54_RS16765	0.54	+0.3
3,674,698	-		LRK54_RS16765	0.54	+0.5
3,674,698	-		LRK54_RS16765	0.54	+4.0
3,674,698	-		LRK54_RS16765	0.54	+0.4
3,674,698	-		LRK54_RS16765	0.54	+0.9
3,674,698	-		LRK54_RS16765	0.54	-0.3
3,674,698	-		LRK54_RS16765	0.54	+0.7
3,674,837	+		LRK54_RS16765	0.72	-1.3
3,674,837	+		LRK54_RS16765	0.72	+0.3
3,674,837	+		LRK54_RS16765	0.72	-0.0
3,674,837	+		LRK54_RS16765	0.72	+0.6
3,674,837	+		LRK54_RS16765	0.72	+1.1
3,674,837	+		LRK54_RS16765	0.72	+0.2
3,674,838	-		LRK54_RS16765	0.72	+1.6
3,675,012	+				+0.0
3,675,012	+				+0.3
3,675,012	+				-1.6
3,675,012	+				+0.0
3,675,012	+				+2.3
3,675,012	+				+0.1
3,675,012	+				+0.5
3,675,012	+				+2.7
3,675,012	+				+1.2
3,675,012	+				+1.1
3,675,012	+				+0.5
3,675,012	+				+0.6
3,675,012	+				+0.7
3,675,012	+				+1.2
3,675,012	+				+1.4
3,675,012	+				+0.3
3,675,012	+				-1.2
3,675,012	+				+0.2
3,675,012	+				-0.4
3,675,012	+				+0.9
3,675,012	+				+3.0
3,675,012	+				+0.9
3,675,012	+				+0.0
3,675,012	+				+1.8
3,675,012	+				-0.8
3,675,012	+				+0.6
3,675,012	+				-0.8
3,675,012	+				-0.8
3,675,012	+				+0.0
3,675,012	+				+0.6
3,675,012	+				-0.1
3,675,012	+				+0.3
3,675,012	+				+0.7
3,675,012	+				+0.9
3,675,012	+				+1.3
3,675,012	+				-0.2
3,675,012	+				-0.4
3,675,012	+				+2.4
3,675,012	+				+0.5
3,675,012	+				+0.5
3,675,012	+				+0.7
3,675,012	+				+1.2
3,675,012	+				+0.5
3,675,012	+				-0.8
3,675,012	+				+0.2
3,675,012	+				+0.1
3,675,012	+				+2.0
3,675,012	+				+0.3
3,675,012	+				+0.8
3,675,012	+				+2.0
3,675,012	+				+0.3
3,675,013	-				-0.8
3,675,013	-				-0.1
3,675,013	-				-0.3
3,675,013	-				+0.3
3,675,013	-				+0.2
3,675,013	-				-0.2
3,675,013	-				+1.6
3,675,013	-				+0.1
3,675,013	-				+1.5
3,675,013	-				+0.1
3,675,013	-				+0.1
3,675,013	-				-0.8
3,675,013	-				+1.0
3,675,013	-				+0.5
3,675,013	-				-1.2
3,675,013	-				-0.5
3,675,013	-				+0.6
3,675,013	-				+0.8
3,675,013	-				-0.7
3,675,013	-				-0.7
3,675,013	-				-1.1
3,675,013	-				+0.6
3,675,013	-				-1.3
3,675,013	-				+0.6
3,675,013	-				+1.5
3,675,013	-				+0.3
3,675,013	-				-0.1
3,675,013	-				+0.3
3,675,013	-				+0.6
3,675,013	-				+0.1
3,675,013	-				+0.9
3,675,013	-				+0.5
3,675,013	-				+0.6
3,675,013	-				-0.1
3,675,013	-				+0.3
3,675,013	-				-1.3
3,675,013	-				+0.4
3,675,013	-				-0.0
3,675,013	-				+0.9
3,675,013	-				-0.0
3,675,013	-				+0.3
3,675,013	-				+1.4
3,675,013	-				+2.1
3,675,013	-				+0.0
3,675,013	-				-0.8
3,675,013	-				-0.2
3,675,013	-				-0.1
3,675,013	-				+0.1
3,675,013	-				+1.3
3,675,013	-				+0.1
3,675,013	-				+0.3
3,675,148	+				-1.7
3,675,148	+				-1.5
3,675,148	+				-0.4
3,675,148	+				-0.8
3,675,148	+				+1.0
3,675,148	+				-0.6
3,675,148	+				-1.3
3,675,148	+				+0.5
3,675,148	+				+1.4
3,675,148	+				-0.6
3,675,149	-				-1.8
3,675,149	-				+1.1
3,675,149	-				+0.5
3,675,149	-				-0.9
3,675,149	-				+0.6
3,675,149	-				-1.5
3,675,149	-				-0.3
3,675,149	-				-0.5
3,675,149	-				-1.6
3,675,149	-				-0.7
3,675,149	-				-1.4
3,675,149	-				-1.2
3,675,150	+				+0.6
3,675,150	+				-0.5
3,675,150	+				+0.7
3,675,150	+				-0.3
3,675,150	+				+0.8
3,675,150	+				-1.1
3,675,150	+				-0.2
3,675,150	+				-0.8
3,675,150	+				-0.1
3,675,150	+				-0.6
3,675,150	+				+0.8
3,675,150	+				+1.6
3,675,150	+				-0.5
3,675,150	+				+0.1
3,675,150	+				+0.7
3,675,150	+				+2.4
3,675,150	+				-1.6
3,675,150	+				+1.3
3,675,151	-				+0.2
3,675,151	-				+1.2
3,675,151	-				+1.1
3,675,151	-				-0.2
3,675,151	-				+0.3
3,675,151	-				-2.7
3,675,151	-				+0.6
3,675,151	-				+0.1
3,675,151	-				-0.1
3,675,151	-				+0.8
3,675,151	-				-1.1
3,675,176	-				-1.9
3,675,186	+				-0.9
3,675,187	-				-1.1
3,675,187	-				-1.4
3,675,264	+				-2.4
3,675,264	+				-1.4
3,675,265	-				-1.4
3,675,265	-				-1.4
3,675,275	+				+1.1
3,675,276	-				+0.7
3,675,325	+				-0.8
3,675,325	+				+1.8
3,675,325	+				-1.1
3,675,325	+				-1.0
3,675,325	+				-1.5
3,675,325	+				+0.5
3,675,325	+				-0.4
3,675,325	+				-1.1
3,675,325	+				-3.4
3,675,325	+				-1.4
3,675,325	+				-2.6
3,675,325	+				+0.8
3,675,325	+				-0.6
3,675,325	+				-1.1
3,675,325	+				+0.9
3,675,325	+				+0.9
3,675,325	+				-0.7
3,675,325	+				-3.2
3,675,325	+				-0.8
3,675,325	+				-1.6
3,675,325	+				-3.2
3,675,325	+				-1.3
3,675,325	+				+0.7
3,675,325	+				-1.2
3,675,325	+				-1.6
3,675,325	+				+0.4
3,675,325	+				-0.9
3,675,325	+				-1.9
3,675,325	+				-0.4
3,675,325	+				-1.5
3,675,325	+				-0.8
3,675,325	+				-1.4
3,675,325	+				-0.3
3,675,325	+				+0.7
3,675,325	+				-0.1
3,675,325	+				-0.6
3,675,325	+				-2.2
3,675,325	+				-1.6
3,675,326	-				-0.3
3,675,326	-				+0.5
3,675,326	-				-3.0
3,675,326	-				-1.7
3,675,326	-				-1.3
3,675,326	-				-0.8
3,675,326	-				-1.2
3,675,326	-				-3.5
3,675,326	-				-1.6
3,675,326	-				-1.1
3,675,326	-				-1.5
3,675,326	-				-1.0
3,675,326	-				-1.3
3,675,326	-				-0.8
3,675,326	-				-1.3
3,675,326	-				-0.9
3,675,326	-				+0.1
3,675,326	-				-0.6
3,675,326	-				-1.4
3,675,326	-				-1.6
3,675,326	-				+0.7
3,675,326	-				-1.4
3,675,326	-				-2.4
3,675,326	-				-2.6
3,675,326	-				+1.0
3,675,326	-				-1.6
3,675,326	-				-2.2
3,675,326	-				+0.8
3,675,326	-				-0.1
3,675,326	-				+0.4
3,675,326	-				+1.4
3,675,326	-				-1.1
3,675,326	-				-0.4
3,675,326	-				+0.0
3,675,326	-				+0.3
3,675,326	-				-0.4
3,675,326	-				-0.3
3,675,326	-				+2.1
3,675,500	-		LRK54_RS16770	0.31	+0.5
3,675,572	+		LRK54_RS16770	0.41	-1.4
3,675,572	+		LRK54_RS16770	0.41	-0.8
3,675,573	-		LRK54_RS16770	0.41	-0.9
3,675,573	-		LRK54_RS16770	0.41	-1.7
3,675,573	-		LRK54_RS16770	0.41	-2.1
3,675,700	+		LRK54_RS16770	0.59	-3.3
3,675,700	+		LRK54_RS16770	0.59	-0.9
3,675,700	+		LRK54_RS16770	0.59	-1.7
3,675,701	-		LRK54_RS16770	0.59	-2.4
3,675,701	-		LRK54_RS16770	0.59	-2.5
3,675,701	-		LRK54_RS16770	0.59	-1.4
3,675,701	-		LRK54_RS16770	0.59	-2.2
3,675,701	-		LRK54_RS16770	0.59	+0.2
3,675,800	+		LRK54_RS16770	0.73	-2.6
3,675,800	+		LRK54_RS16770	0.73	+0.8
3,675,800	+		LRK54_RS16770	0.73	-1.7
3,675,800	+		LRK54_RS16770	0.73	-1.4
3,675,800	+		LRK54_RS16770	0.73	-0.7
3,675,801	-		LRK54_RS16770	0.74	-0.8
3,675,801	-		LRK54_RS16770	0.74	-0.9
3,675,801	-		LRK54_RS16770	0.74	+0.3
3,675,801	-		LRK54_RS16770	0.74	+0.1
3,675,865	+		LRK54_RS16770	0.83	-0.2
3,675,865	+		LRK54_RS16770	0.83	-1.6
3,675,865	+		LRK54_RS16770	0.83	-1.6
3,675,865	+		LRK54_RS16770	0.83	-1.1
3,675,865	+		LRK54_RS16770	0.83	-2.1
3,675,865	+		LRK54_RS16770	0.83	-0.4
3,675,865	+		LRK54_RS16770	0.83	-0.3
3,675,865	+		LRK54_RS16770	0.83	-2.7
3,675,865	+		LRK54_RS16770	0.83	+0.2
3,675,865	+		LRK54_RS16770	0.83	-2.4
3,675,866	-		LRK54_RS16770	0.83	-2.4
3,675,866	-		LRK54_RS16770	0.83	-0.5
3,675,866	-		LRK54_RS16770	0.83	-0.8
3,675,866	-		LRK54_RS16770	0.83	-1.8
3,675,866	-		LRK54_RS16770	0.83	-1.3
3,675,866	-		LRK54_RS16770	0.83	-0.3
3,675,866	-		LRK54_RS16770	0.83	-2.7
3,675,866	-		LRK54_RS16770	0.83	-2.2
3,675,929	+				-1.6
3,676,000	+				-0.5
3,676,000	+				-0.6
3,676,000	+				-1.6
3,676,000	+				-1.4
3,676,000	+				-2.1
3,676,000	+				-0.3
3,676,000	+				-0.1
3,676,000	+				-0.6
3,676,000	+				+0.7
3,676,000	+				-1.8
3,676,000	+				+0.3
3,676,000	+				+0.8
3,676,000	+				-0.3
3,676,000	+				+0.4
3,676,000	+				-1.7
3,676,000	+				-1.1
3,676,000	+				-0.2
3,676,000	+				-0.3
3,676,000	+				+0.8
3,676,000	+				-1.6
3,676,000	+				-0.3
3,676,001	-				+0.4
3,676,001	-				-0.4
3,676,001	-				-1.0
3,676,001	-				-0.7
3,676,001	-				-1.4
3,676,001	-				-1.2
3,676,001	-				-1.2
3,676,001	-				-0.2
3,676,001	-				-0.6
3,676,001	-				-0.1
3,676,001	-				+0.0
3,676,001	-				+0.8
3,676,001	-				-0.8
3,676,001	-				-0.3
3,676,001	-				+0.8
3,676,001	-				-0.6
3,676,001	-				+0.6
3,676,001	-				+0.1
3,676,034	-				-0.8