Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13300

Experiment: R2A with Manganese (II) chloride tetrahydrate 6.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 6.25 mM
2,985,503	+		LRK54_RS13295	0.79	+0.5
2,985,503	+		LRK54_RS13295	0.79	-1.1
2,985,503	+		LRK54_RS13295	0.79	-0.1
2,985,503	+		LRK54_RS13295	0.79	+1.3
2,985,503	+		LRK54_RS13295	0.79	-0.2
2,985,503	+		LRK54_RS13295	0.79	+0.8
2,985,503	+		LRK54_RS13295	0.79	+0.1
2,985,503	+		LRK54_RS13295	0.79	-0.6
2,985,503	+		LRK54_RS13295	0.79	-0.9
2,985,503	+		LRK54_RS13295	0.79	+0.3
2,985,503	+		LRK54_RS13295	0.79	-1.4
2,985,503	+		LRK54_RS13295	0.79	-0.2
2,985,503	+		LRK54_RS13295	0.79	-0.1
2,985,503	+		LRK54_RS13295	0.79	+0.3
2,985,503	+		LRK54_RS13295	0.79	-0.8
2,985,503	+		LRK54_RS13295	0.79	+0.5
2,985,503	+		LRK54_RS13295	0.79	-0.4
2,985,503	+		LRK54_RS13295	0.79	+1.2
2,985,503	+		LRK54_RS13295	0.79	+1.0
2,985,503	+		LRK54_RS13295	0.79	+0.5
2,985,503	+		LRK54_RS13295	0.79	-0.5
2,985,503	+		LRK54_RS13295	0.79	+0.4
2,985,504	-		LRK54_RS13295	0.79	-1.0
2,985,504	-		LRK54_RS13295	0.79	+0.5
2,985,504	-		LRK54_RS13295	0.79	+0.2
2,985,504	-		LRK54_RS13295	0.79	+0.2
2,985,504	-		LRK54_RS13295	0.79	+0.7
2,985,504	-		LRK54_RS13295	0.79	-0.3
2,985,504	-		LRK54_RS13295	0.79	+0.9
2,985,504	-		LRK54_RS13295	0.79	-0.2
2,985,504	-		LRK54_RS13295	0.79	+0.6
2,985,504	-		LRK54_RS13295	0.79	-0.4
2,985,504	-		LRK54_RS13295	0.79	+0.4
2,985,504	-		LRK54_RS13295	0.79	-1.0
2,985,504	-		LRK54_RS13295	0.79	-0.9
2,985,504	-		LRK54_RS13295	0.79	+0.9
2,985,504	-		LRK54_RS13295	0.79	+0.6
2,985,504	-		LRK54_RS13295	0.79	+0.5
2,985,504	-		LRK54_RS13295	0.79	-0.6
2,985,504	-		LRK54_RS13295	0.79	-0.4
2,985,508	+		LRK54_RS13295	0.80	+0.5
2,985,508	+		LRK54_RS13295	0.80	-1.2
2,985,508	+		LRK54_RS13295	0.80	+1.9
2,985,508	+		LRK54_RS13295	0.80	+0.4
2,985,508	+		LRK54_RS13295	0.80	+0.8
2,985,508	+		LRK54_RS13295	0.80	+0.7
2,985,509	-		LRK54_RS13295	0.80	-0.6
2,985,509	-		LRK54_RS13295	0.80	-0.1
2,985,509	-		LRK54_RS13295	0.80	+0.9
2,985,509	-		LRK54_RS13295	0.80	-1.8
2,985,509	-		LRK54_RS13295	0.80	+1.4
2,985,509	-		LRK54_RS13295	0.80	-0.3
2,985,509	-		LRK54_RS13295	0.80	-0.6
2,985,572	+		LRK54_RS13295	0.86	-0.5
2,985,572	+		LRK54_RS13295	0.86	+0.8
2,985,572	+		LRK54_RS13295	0.86	-2.1
2,985,572	+		LRK54_RS13295	0.86	-1.3
2,985,572	+		LRK54_RS13295	0.86	+0.3
2,985,572	+		LRK54_RS13295	0.86	+0.8
2,985,572	+		LRK54_RS13295	0.86	-0.2
2,985,572	+		LRK54_RS13295	0.86	+0.2
2,985,573	-		LRK54_RS13295	0.86	-2.3
2,985,573	-		LRK54_RS13295	0.86	+0.0
2,985,573	-		LRK54_RS13295	0.86	+0.8
2,985,573	-		LRK54_RS13295	0.86	+0.9
2,985,573	-		LRK54_RS13295	0.86	-0.8
2,985,573	-		LRK54_RS13295	0.86	-0.4
2,985,573	-		LRK54_RS13295	0.86	-1.5
2,985,573	-		LRK54_RS13295	0.86	+0.6
2,985,586	+		LRK54_RS13295	0.87	-1.9
2,985,586	+		LRK54_RS13295	0.87	-0.1
2,985,598	-		LRK54_RS13295	0.88	-0.9
2,985,663	+				+0.1
2,985,663	+				-1.7
2,985,664	-				-1.5
2,985,664	-				+0.4
2,985,711	+				-1.6
2,985,711	+				+1.8
2,985,712	-				-1.7
2,985,712	-				-0.0
2,985,712	-				+0.2
2,985,765	+				+0.3
2,985,807	+				-1.8
2,985,807	+				+0.8
2,985,807	+				-1.1
2,985,807	+				-0.6
2,985,807	+				-1.8
2,985,807	+				+0.3
2,985,807	+				-0.2
2,985,808	-				+0.1
2,985,808	-				+0.2
2,985,810	+				+1.1
2,985,811	-				+0.8
2,985,811	-				-0.0
2,985,811	-				+0.4
2,985,811	-				+0.1
2,985,830	+				-1.5
2,985,831	-				+0.0
2,985,831	-				-0.2
2,985,839	-				+2.8
2,985,866	+				-0.4
2,985,866	+				-1.0
2,985,866	+				+0.1
2,985,867	-				-0.4
2,985,867	-				+0.0
2,986,036	+				-1.6
2,986,036	+				+0.5
2,986,037	-				+0.0
2,986,037	-				-0.9
2,986,037	-				+1.4
2,986,037	-				+0.9
2,986,037	-				-0.5
2,986,037	-				+0.8
2,986,037	-				+3.5
2,986,037	-				+0.7
2,986,064	+				-0.2
2,986,065	-				-0.6
2,986,065	-				+1.4
2,986,076	+				-1.3
2,986,076	+				-1.3
2,986,076	+				-0.5
2,986,076	+				+0.2
2,986,076	+				-0.6
2,986,076	+				-0.4
2,986,077	-				+0.3
2,986,077	-				+0.1
2,986,077	-				-1.2
2,986,077	-				-1.3
2,986,098	+				-0.5
2,986,098	+				-1.8
2,986,098	+				+0.3
2,986,098	+				+0.7
2,986,099	-				+1.4
2,986,099	-				-1.9
2,986,109	+				-0.3
2,986,109	+				-1.8
2,986,109	+				+0.2
2,986,110	-				-1.1
2,986,110	-				-0.7
2,986,110	-				-0.7
2,986,110	-				-0.2
2,986,188	+				+1.0
2,986,188	+				+0.2
2,986,188	+				+0.0
2,986,188	+				-0.1
2,986,188	+				-0.8
2,986,189	-				+0.1
2,986,189	-				+0.0
2,986,189	-				+0.7
2,986,190	-				-1.2
2,986,221	+				+4.0
2,986,221	+				-0.3
2,986,221	+				-0.7
2,986,221	+				+1.0
2,986,221	+				+0.4
2,986,222	-				-0.1
2,986,222	-				-1.1
2,986,222	-				-3.2
2,986,222	-				-0.5
2,986,222	-				+1.4
2,986,266	+				+0.4
2,986,266	+				+1.4
2,986,266	+				-0.8
2,986,266	+				-0.7
2,986,266	+				-0.4
2,986,267	-				-0.3
2,986,267	-				-0.2
2,986,267	-				+0.2
2,986,267	-				-0.0
2,986,267	-				+0.6
2,986,267	-				-1.4
2,986,267	-				+0.7
2,986,267	-				+1.4
2,986,267	-				-1.8
2,986,267	-				-0.8
2,986,267	-				-1.0
2,986,267	-				-0.4
2,986,267	-				-1.4
2,986,268	+				+0.4
2,986,269	-				-0.7
2,986,269	-				-1.0
2,986,269	-				-0.5
2,986,308	+				+0.2
2,986,309	-				+0.6
2,986,403	+		LRK54_RS13300	0.20	-0.3
2,986,403	+		LRK54_RS13300	0.20	-0.8
2,986,403	+		LRK54_RS13300	0.20	+0.1
2,986,403	+		LRK54_RS13300	0.20	-0.1
2,986,403	+		LRK54_RS13300	0.20	+0.5
2,986,403	+		LRK54_RS13300	0.20	+0.5
2,986,403	+		LRK54_RS13300	0.20	-0.6
2,986,404	-		LRK54_RS13300	0.20	+0.2
2,986,404	-		LRK54_RS13300	0.20	-2.0
2,986,404	-		LRK54_RS13300	0.20	-0.5
2,986,404	-		LRK54_RS13300	0.20	+2.1
2,986,404	-		LRK54_RS13300	0.20	-1.1
2,986,404	-		LRK54_RS13300	0.20	+0.2
2,986,405	+		LRK54_RS13300	0.20	-1.0
2,986,405	+		LRK54_RS13300	0.20	-0.5
2,986,406	-		LRK54_RS13300	0.20	-0.6
2,986,406	-		LRK54_RS13300	0.20	-1.1
2,986,406	-		LRK54_RS13300	0.20	-1.8
2,986,406	-		LRK54_RS13300	0.20	-1.9
2,986,406	-		LRK54_RS13300	0.20	+1.2
2,986,406	-		LRK54_RS13300	0.20	+0.8
2,986,406	-		LRK54_RS13300	0.20	-1.6
2,986,406	-		LRK54_RS13300	0.20	-1.2
2,986,415	-		LRK54_RS13300	0.21	+0.1
2,986,416	+		LRK54_RS13300	0.21	-0.5
2,986,416	+		LRK54_RS13300	0.21	-0.6
2,986,417	-		LRK54_RS13300	0.21	-0.9
2,986,417	-		LRK54_RS13300	0.21	+1.7
2,986,417	-		LRK54_RS13300	0.21	-0.0
2,986,417	-		LRK54_RS13300	0.21	-0.9
2,986,448	-		LRK54_RS13300	0.25	+1.1
2,986,496	+		LRK54_RS13300	0.31	-0.4
2,986,496	+		LRK54_RS13300	0.31	+0.0
2,986,496	+		LRK54_RS13300	0.31	+0.2
2,986,496	+		LRK54_RS13300	0.31	-1.6
2,986,497	-		LRK54_RS13300	0.31	-2.6
2,986,526	-		LRK54_RS13300	0.34	-2.2
2,986,527	+		LRK54_RS13300	0.34	+1.3
2,986,527	+		LRK54_RS13300	0.34	+0.4
2,986,527	+		LRK54_RS13300	0.34	+0.8
2,986,527	+		LRK54_RS13300	0.34	-0.8
2,986,527	+		LRK54_RS13300	0.34	+0.5
2,986,527	+		LRK54_RS13300	0.34	+0.0
2,986,527	+		LRK54_RS13300	0.34	-1.2
2,986,527	+		LRK54_RS13300	0.34	-0.2
2,986,527	+		LRK54_RS13300	0.34	-2.1
2,986,527	+		LRK54_RS13300	0.34	+0.2
2,986,527	+		LRK54_RS13300	0.34	+0.7
2,986,528	-		LRK54_RS13300	0.34	-0.5
2,986,528	-		LRK54_RS13300	0.34	+0.3
2,986,528	-		LRK54_RS13300	0.34	+0.8
2,986,528	-		LRK54_RS13300	0.34	-1.6
2,986,528	-		LRK54_RS13300	0.34	-2.4
2,986,528	-		LRK54_RS13300	0.34	-1.4
2,986,528	-		LRK54_RS13300	0.34	+1.7
2,986,528	-		LRK54_RS13300	0.34	-1.6
2,986,528	-		LRK54_RS13300	0.34	-1.0
2,986,528	-		LRK54_RS13300	0.34	-0.8
2,986,528	-		LRK54_RS13300	0.34	+0.3
2,986,528	-		LRK54_RS13300	0.34	-0.3
2,986,528	-		LRK54_RS13300	0.34	+0.3
2,986,528	-		LRK54_RS13300	0.34	-1.1
2,986,528	-		LRK54_RS13300	0.34	+0.7
2,986,528	-		LRK54_RS13300	0.34	+1.5
2,986,528	-		LRK54_RS13300	0.34	+0.5
2,986,528	-		LRK54_RS13300	0.34	-0.4
2,986,528	-		LRK54_RS13300	0.34	-1.7
2,986,577	+		LRK54_RS13300	0.40	-0.7
2,986,577	+		LRK54_RS13300	0.40	-0.6
2,986,577	+		LRK54_RS13300	0.40	+0.7
2,986,577	+		LRK54_RS13300	0.40	-1.4
2,986,577	+		LRK54_RS13300	0.40	+0.2
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	+0.4
2,986,577	+		LRK54_RS13300	0.40	+1.0
2,986,577	+		LRK54_RS13300	0.40	+0.5
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	-0.1
2,986,577	+		LRK54_RS13300	0.40	-0.6
2,986,577	+		LRK54_RS13300	0.40	-0.5
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	+0.3
2,986,577	+		LRK54_RS13300	0.40	-1.8
2,986,577	+		LRK54_RS13300	0.40	+0.1
2,986,577	+		LRK54_RS13300	0.40	+0.4
2,986,577	+		LRK54_RS13300	0.40	-0.5
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	+1.4
2,986,577	+		LRK54_RS13300	0.40	+0.5
2,986,577	+		LRK54_RS13300	0.40	-1.2
2,986,577	+		LRK54_RS13300	0.40	-1.1
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	-0.5
2,986,577	+		LRK54_RS13300	0.40	-0.6
2,986,577	+		LRK54_RS13300	0.40	+1.4
2,986,577	+		LRK54_RS13300	0.40	-3.2
2,986,577	+		LRK54_RS13300	0.40	+1.4
2,986,577	+		LRK54_RS13300	0.40	+0.5
2,986,577	+		LRK54_RS13300	0.40	+0.2
2,986,577	+		LRK54_RS13300	0.40	-0.8
2,986,577	+		LRK54_RS13300	0.40	-0.7
2,986,577	+		LRK54_RS13300	0.40	+0.3
2,986,577	+		LRK54_RS13300	0.40	-0.2
2,986,577	+		LRK54_RS13300	0.40	+0.7
2,986,577	+		LRK54_RS13300	0.40	+0.6
2,986,577	+		LRK54_RS13300	0.40	+1.2
2,986,577	+		LRK54_RS13300	0.40	-0.2
2,986,577	+		LRK54_RS13300	0.40	-0.5
2,986,577	+		LRK54_RS13300	0.40	+0.7
2,986,577	+		LRK54_RS13300	0.40	-0.2
2,986,577	+		LRK54_RS13300	0.40	-0.4
2,986,577	+		LRK54_RS13300	0.40	+0.2
2,986,577	+		LRK54_RS13300	0.40	-0.0
2,986,577	+		LRK54_RS13300	0.40	+0.8
2,986,577	+		LRK54_RS13300	0.40	+0.5
2,986,577	+		LRK54_RS13300	0.40	+0.1
2,986,577	+		LRK54_RS13300	0.40	-0.5
2,986,577	+		LRK54_RS13300	0.40	-1.2
2,986,577	+		LRK54_RS13300	0.40	+0.3
2,986,577	+		LRK54_RS13300	0.40	+0.5
2,986,577	+		LRK54_RS13300	0.40	-1.5
2,986,577	+		LRK54_RS13300	0.40	-1.9
2,986,577	+		LRK54_RS13300	0.40	-1.6
2,986,577	+		LRK54_RS13300	0.40	+1.8
2,986,577	+		LRK54_RS13300	0.40	-0.7
2,986,577	+		LRK54_RS13300	0.40	+0.1
2,986,577	+		LRK54_RS13300	0.40	-0.6
2,986,577	+		LRK54_RS13300	0.40	-1.0
2,986,577	+		LRK54_RS13300	0.40	-0.4
2,986,577	+		LRK54_RS13300	0.40	+0.7
2,986,577	+		LRK54_RS13300	0.40	+1.3
2,986,577	+		LRK54_RS13300	0.40	-1.0
2,986,577	+		LRK54_RS13300	0.40	-0.1
2,986,578	-		LRK54_RS13300	0.40	-0.3
2,986,578	-		LRK54_RS13300	0.40	-0.9
2,986,578	-		LRK54_RS13300	0.40	-1.0
2,986,578	-		LRK54_RS13300	0.40	-1.0
2,986,578	-		LRK54_RS13300	0.40	+0.9
2,986,578	-		LRK54_RS13300	0.40	+0.2
2,986,578	-		LRK54_RS13300	0.40	-1.1
2,986,578	-		LRK54_RS13300	0.40	+0.9
2,986,578	-		LRK54_RS13300	0.40	-0.8
2,986,578	-		LRK54_RS13300	0.40	-0.4
2,986,578	-		LRK54_RS13300	0.40	+0.8
2,986,578	-		LRK54_RS13300	0.40	-3.4
2,986,578	-		LRK54_RS13300	0.40	+0.4
2,986,578	-		LRK54_RS13300	0.40	-0.3
2,986,578	-		LRK54_RS13300	0.40	-0.8
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2,987,729	-		LRK54_RS13305	0.62	+1.4
2,987,729	-		LRK54_RS13305	0.62	-0.2
2,987,729	-		LRK54_RS13305	0.62	+0.1
2,987,729	-		LRK54_RS13305	0.62	-1.4
2,987,729	-		LRK54_RS13305	0.62	-3.0
2,987,729	-		LRK54_RS13305	0.62	+1.8
2,987,729	-		LRK54_RS13305	0.62	+0.1
2,987,729	-		LRK54_RS13305	0.62	+0.8
2,987,772	+		LRK54_RS13305	0.68	+0.1
2,987,772	+		LRK54_RS13305	0.68	-0.4
2,987,772	+		LRK54_RS13305	0.68	-0.0
2,987,772	+		LRK54_RS13305	0.68	+0.7
2,987,772	+		LRK54_RS13305	0.68	+0.1
2,987,772	+		LRK54_RS13305	0.68	-0.6
2,987,772	+		LRK54_RS13305	0.68	-0.3
2,987,772	+		LRK54_RS13305	0.68	-3.0
2,987,773	-		LRK54_RS13305	0.68	-0.3
2,987,773	-		LRK54_RS13305	0.68	+0.6
2,987,773	-		LRK54_RS13305	0.68	-1.1
2,987,773	-		LRK54_RS13305	0.68	-1.2
2,987,773	-		LRK54_RS13305	0.68	+0.2
2,987,773	-		LRK54_RS13305	0.68	-0.4
2,987,773	-		LRK54_RS13305	0.68	-0.6
2,987,805	+		LRK54_RS13305	0.72	-0.4
2,987,805	+		LRK54_RS13305	0.72	-0.6
2,987,805	+		LRK54_RS13305	0.72	-1.7
2,987,805	+		LRK54_RS13305	0.72	-0.4
2,987,805	+		LRK54_RS13305	0.72	+0.1
2,987,805	+		LRK54_RS13305	0.72	+0.4
2,987,805	+		LRK54_RS13305	0.72	+0.3
2,987,805	+		LRK54_RS13305	0.72	-0.3
2,987,805	+		LRK54_RS13305	0.72	-0.6
2,987,805	+		LRK54_RS13305	0.72	+0.7
2,987,806	-		LRK54_RS13305	0.73	-0.3
2,987,806	-		LRK54_RS13305	0.73	-0.1
2,987,806	-		LRK54_RS13305	0.73	+0.2
2,987,806	-		LRK54_RS13305	0.73	-1.1
2,987,806	-		LRK54_RS13305	0.73	-0.8
2,987,806	-		LRK54_RS13305	0.73	+0.8
2,987,806	-		LRK54_RS13305	0.73	+1.5
2,987,806	-		LRK54_RS13305	0.73	-0.3
2,987,806	-		LRK54_RS13305	0.73	+0.1
2,987,806	-		LRK54_RS13305	0.73	-0.7
2,987,806	-		LRK54_RS13305	0.73	-1.3
2,987,806	-		LRK54_RS13305	0.73	-1.5
2,987,806	-		LRK54_RS13305	0.73	-2.6
2,987,806	-		LRK54_RS13305	0.73	+2.7
2,987,961	+				+0.5
2,987,961	+				+0.6
2,987,962	-				-0.6
2,987,962	-				+1.8
2,987,962	-				+0.2
2,988,035	+				-0.9
2,988,069	+				-0.8
2,988,069	+				+0.2
2,988,069	+				+0.1
2,988,070	-				-0.5
2,988,070	-				-2.2
2,988,070	-				-0.7
2,988,070	-				+0.4
2,988,070	-				-0.5
2,988,070	-				+1.2
2,988,070	-				-1.0
2,988,079	+				-1.2
2,988,080	-				-0.3