Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10235

Experiment: R2A with Manganese (II) chloride tetrahydrate 6.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 6.25 mM
2,253,892	+				+1.9
2,253,893	-				-1.6
2,253,962	+				-0.7
2,253,962	+				+0.9
2,253,962	+				-0.7
2,253,962	+				+0.5
2,253,962	+				+0.2
2,253,962	+				-0.0
2,253,963	-				+0.6
2,253,963	-				-0.2
2,253,963	-				+0.6
2,253,963	-				-1.5
2,253,963	-				+0.1
2,253,963	-				-0.2
2,254,054	+		LRK54_RS10230	0.13	-0.5
2,254,054	+		LRK54_RS10230	0.13	+0.0
2,254,054	+		LRK54_RS10230	0.13	+2.3
2,254,054	+		LRK54_RS10230	0.13	+1.3
2,254,054	+		LRK54_RS10230	0.13	+0.8
2,254,054	+		LRK54_RS10230	0.13	-0.0
2,254,055	-		LRK54_RS10230	0.13	-0.1
2,254,055	-		LRK54_RS10230	0.13	-0.4
2,254,055	-		LRK54_RS10230	0.13	-0.8
2,254,055	-		LRK54_RS10230	0.13	-1.1
2,254,055	-		LRK54_RS10230	0.13	-0.6
2,254,055	-		LRK54_RS10230	0.13	-0.8
2,254,391	-		LRK54_RS10230	0.58	+0.2
2,254,833	+				-0.0
2,254,833	+				+0.0
2,254,833	+				-0.2
2,254,833	+				-1.0
2,254,833	+				+0.0
2,254,833	+				-1.7
2,254,833	+				-0.1
2,254,833	+				-0.4
2,254,834	-				-0.4
2,254,834	-				+0.3
2,254,834	-				+0.2
2,254,834	-				-0.3
2,254,834	-				+0.4
2,254,834	-				+1.3
2,254,834	-				+1.3
2,254,834	-				-0.2
2,254,834	-				+0.3
2,254,834	-				+0.3
2,254,910	+		LRK54_RS10235	0.14	+0.8
2,254,910	+		LRK54_RS10235	0.14	-1.6
2,254,911	-		LRK54_RS10235	0.14	+0.9
2,254,911	-		LRK54_RS10235	0.14	-0.7
2,254,911	-		LRK54_RS10235	0.14	+1.0
2,254,911	-		LRK54_RS10235	0.14	-0.4
2,254,911	-		LRK54_RS10235	0.14	-0.2
2,254,911	-		LRK54_RS10235	0.14	-0.4
2,254,925	+		LRK54_RS10235	0.16	+0.8
2,254,925	+		LRK54_RS10235	0.16	+0.6
2,254,925	+		LRK54_RS10235	0.16	+1.3
2,254,925	+		LRK54_RS10235	0.16	+0.3
2,254,925	+		LRK54_RS10235	0.16	-1.4
2,254,925	+		LRK54_RS10235	0.16	-1.1
2,254,925	+		LRK54_RS10235	0.16	-2.4
2,254,926	-		LRK54_RS10235	0.16	-0.5
2,254,926	-		LRK54_RS10235	0.16	+0.2
2,254,926	-		LRK54_RS10235	0.16	-1.5
2,254,926	-		LRK54_RS10235	0.16	-0.6
2,254,926	-		LRK54_RS10235	0.16	-0.1
2,254,926	-		LRK54_RS10235	0.16	+1.0
2,254,927	-		LRK54_RS10235	0.16	-0.6
2,254,976	+		LRK54_RS10235	0.22	+2.3
2,254,977	-		LRK54_RS10235	0.22	+0.3
2,254,977	-		LRK54_RS10235	0.22	-0.2
2,255,015	+		LRK54_RS10235	0.27	-0.0
2,255,015	+		LRK54_RS10235	0.27	+0.2
2,255,015	+		LRK54_RS10235	0.27	-2.1
2,255,015	+		LRK54_RS10235	0.27	-0.1
2,255,015	+		LRK54_RS10235	0.27	-0.3
2,255,015	+		LRK54_RS10235	0.27	+0.2
2,255,015	+		LRK54_RS10235	0.27	+0.0
2,255,015	+		LRK54_RS10235	0.27	-1.2
2,255,015	+		LRK54_RS10235	0.27	-1.0
2,255,015	+		LRK54_RS10235	0.27	+0.5
2,255,016	-		LRK54_RS10235	0.27	+0.2
2,255,016	-		LRK54_RS10235	0.27	-2.4
2,255,016	-		LRK54_RS10235	0.27	+0.6
2,255,016	-		LRK54_RS10235	0.27	-0.0
2,255,016	-		LRK54_RS10235	0.27	-0.7
2,255,016	-		LRK54_RS10235	0.27	-0.2
2,255,016	-		LRK54_RS10235	0.27	+0.4
2,255,016	-		LRK54_RS10235	0.27	+0.3
2,255,016	-		LRK54_RS10235	0.27	-0.5
2,255,016	-		LRK54_RS10235	0.27	+2.3
2,255,016	-		LRK54_RS10235	0.27	+0.9
2,255,016	-		LRK54_RS10235	0.27	+0.3
2,255,016	-		LRK54_RS10235	0.27	+0.3
2,255,016	-		LRK54_RS10235	0.27	-0.7
2,255,074	+		LRK54_RS10235	0.34	-0.3
2,255,074	+		LRK54_RS10235	0.34	+0.5
2,255,153	-		LRK54_RS10235	0.43	-0.5
2,255,171	+		LRK54_RS10235	0.46	-0.5
2,255,171	+		LRK54_RS10235	0.46	-1.0
2,255,171	+		LRK54_RS10235	0.46	+3.3
2,255,172	-		LRK54_RS10235	0.46	-0.4
2,255,172	-		LRK54_RS10235	0.46	-0.2
2,255,172	-		LRK54_RS10235	0.46	+0.2
2,255,279	+		LRK54_RS10235	0.59	+0.4
2,255,296	+		LRK54_RS10235	0.61	-1.8
2,255,296	+		LRK54_RS10235	0.61	+0.1
2,255,296	+		LRK54_RS10235	0.61	+1.1
2,255,296	+		LRK54_RS10235	0.61	+0.6
2,255,296	+		LRK54_RS10235	0.61	-0.4
2,255,297	-		LRK54_RS10235	0.61	+0.4
2,255,297	-		LRK54_RS10235	0.61	-0.3
2,255,297	-		LRK54_RS10235	0.61	-1.2
2,255,298	+		LRK54_RS10235	0.61	-0.0
2,255,300	+		LRK54_RS10235	0.61	-0.5
2,255,300	+		LRK54_RS10235	0.61	+0.1
2,255,300	+		LRK54_RS10235	0.61	-1.1
2,255,300	+		LRK54_RS10235	0.61	+0.5
2,255,300	+		LRK54_RS10235	0.61	+0.6
2,255,300	+		LRK54_RS10235	0.61	+0.4
2,255,300	+		LRK54_RS10235	0.61	+1.0
2,255,300	+		LRK54_RS10235	0.61	+0.2
2,255,300	+		LRK54_RS10235	0.61	-0.3
2,255,300	+		LRK54_RS10235	0.61	+0.3
2,255,300	+		LRK54_RS10235	0.61	-0.9
2,255,300	+		LRK54_RS10235	0.61	+0.4
2,255,300	+		LRK54_RS10235	0.61	-0.2
2,255,300	+		LRK54_RS10235	0.61	+2.1
2,255,300	+		LRK54_RS10235	0.61	-1.2
2,255,300	+		LRK54_RS10235	0.61	-1.0
2,255,300	+		LRK54_RS10235	0.61	-1.7
2,255,300	+		LRK54_RS10235	0.61	+0.3
2,255,300	+		LRK54_RS10235	0.61	-0.1
2,255,300	+		LRK54_RS10235	0.61	-1.3
2,255,300	+		LRK54_RS10235	0.61	-0.0
2,255,300	+		LRK54_RS10235	0.61	+0.3
2,255,300	+		LRK54_RS10235	0.61	-1.3
2,255,300	+		LRK54_RS10235	0.61	+0.4
2,255,300	+		LRK54_RS10235	0.61	+0.2
2,255,300	+		LRK54_RS10235	0.61	+0.0
2,255,300	+		LRK54_RS10235	0.61	-1.5
2,255,300	+		LRK54_RS10235	0.61	+0.2
2,255,300	+		LRK54_RS10235	0.61	-0.6
2,255,300	+		LRK54_RS10235	0.61	-1.4
2,255,300	+		LRK54_RS10235	0.61	-0.3
2,255,300	+		LRK54_RS10235	0.61	-1.1
2,255,300	+		LRK54_RS10235	0.61	-0.4
2,255,300	+		LRK54_RS10235	0.61	+1.1
2,255,300	+		LRK54_RS10235	0.61	-0.6
2,255,300	+		LRK54_RS10235	0.61	+0.6
2,255,300	+		LRK54_RS10235	0.61	-1.1
2,255,300	+		LRK54_RS10235	0.61	+0.6
2,255,300	+		LRK54_RS10235	0.61	-0.6
2,255,300	+		LRK54_RS10235	0.61	+0.3
2,255,300	+		LRK54_RS10235	0.61	+0.3
2,255,300	+		LRK54_RS10235	0.61	+0.0
2,255,301	-		LRK54_RS10235	0.61	-0.3
2,255,301	-		LRK54_RS10235	0.61	-2.1
2,255,301	-		LRK54_RS10235	0.61	-0.5
2,255,301	-		LRK54_RS10235	0.61	+0.0
2,255,301	-		LRK54_RS10235	0.61	+0.4
2,255,301	-		LRK54_RS10235	0.61	-0.3
2,255,301	-		LRK54_RS10235	0.61	+0.9
2,255,301	-		LRK54_RS10235	0.61	-0.5
2,255,301	-		LRK54_RS10235	0.61	+3.2
2,255,301	-		LRK54_RS10235	0.61	-0.3
2,255,301	-		LRK54_RS10235	0.61	+0.9
2,255,301	-		LRK54_RS10235	0.61	-0.3
2,255,301	-		LRK54_RS10235	0.61	+1.8
2,255,301	-		LRK54_RS10235	0.61	+1.6
2,255,301	-		LRK54_RS10235	0.61	+0.3
2,255,301	-		LRK54_RS10235	0.61	+0.8
2,255,301	-		LRK54_RS10235	0.61	+0.0
2,255,301	-		LRK54_RS10235	0.61	-0.0
2,255,301	-		LRK54_RS10235	0.61	-0.0
2,255,301	-		LRK54_RS10235	0.61	+0.5
2,255,301	-		LRK54_RS10235	0.61	-0.7
2,255,301	-		LRK54_RS10235	0.61	-2.4
2,255,301	-		LRK54_RS10235	0.61	-0.4
2,255,351	+		LRK54_RS10235	0.68	-0.3
2,255,351	+		LRK54_RS10235	0.68	-0.1
2,255,351	+		LRK54_RS10235	0.68	+1.1
2,255,352	-		LRK54_RS10235	0.68	-0.3
2,255,352	-		LRK54_RS10235	0.68	-0.1
2,255,352	-		LRK54_RS10235	0.68	-0.1
2,255,352	-		LRK54_RS10235	0.68	-0.7
2,255,366	+		LRK54_RS10235	0.69	+0.5
2,255,366	+		LRK54_RS10235	0.69	-1.1
2,255,366	+		LRK54_RS10235	0.69	+0.3
2,255,366	+		LRK54_RS10235	0.69	-0.6
2,255,366	+		LRK54_RS10235	0.69	+0.4
2,255,366	+		LRK54_RS10235	0.69	-0.2
2,255,366	+		LRK54_RS10235	0.69	-0.9
2,255,366	+		LRK54_RS10235	0.69	-1.4
2,255,366	+		LRK54_RS10235	0.69	+0.5
2,255,367	-		LRK54_RS10235	0.69	+0.6
2,255,367	-		LRK54_RS10235	0.69	-0.1
2,255,367	-		LRK54_RS10235	0.69	-0.3
2,255,367	-		LRK54_RS10235	0.69	+0.5
2,255,367	-		LRK54_RS10235	0.69	+0.3
2,255,367	-		LRK54_RS10235	0.69	-0.0
2,255,367	-		LRK54_RS10235	0.69	+0.3
2,255,367	-		LRK54_RS10235	0.69	+0.9
2,255,367	-		LRK54_RS10235	0.69	-0.1
2,255,411	+		LRK54_RS10235	0.75	+0.3
2,255,411	+		LRK54_RS10235	0.75	+0.8
2,255,411	+		LRK54_RS10235	0.75	-0.7
2,255,411	+		LRK54_RS10235	0.75	-1.1
2,255,411	+		LRK54_RS10235	0.75	+0.3
2,255,411	+		LRK54_RS10235	0.75	-1.1
2,255,411	+		LRK54_RS10235	0.75	+0.4
2,255,411	+		LRK54_RS10235	0.75	+0.2
2,255,412	-		LRK54_RS10235	0.75	+0.1
2,255,412	-		LRK54_RS10235	0.75	+0.0
2,255,412	-		LRK54_RS10235	0.75	+0.3
2,255,412	-		LRK54_RS10235	0.75	+1.1
2,255,412	-		LRK54_RS10235	0.75	-0.2
2,255,444	+		LRK54_RS10235	0.79	+0.1
2,255,444	+		LRK54_RS10235	0.79	-0.8
2,255,444	+		LRK54_RS10235	0.79	+0.2
2,255,444	+		LRK54_RS10235	0.79	+0.8
2,255,445	-		LRK54_RS10235	0.79	-0.8
2,255,445	-		LRK54_RS10235	0.79	+0.2
2,255,445	-		LRK54_RS10235	0.79	+0.8
2,255,445	-		LRK54_RS10235	0.79	-0.2
2,255,445	-		LRK54_RS10235	0.79	+0.0
2,255,447	+		LRK54_RS10235	0.79	-0.5
2,255,447	+		LRK54_RS10235	0.79	-0.3
2,255,447	+		LRK54_RS10235	0.79	-0.5
2,255,447	+		LRK54_RS10235	0.79	+2.1
2,255,447	+		LRK54_RS10235	0.79	-0.2
2,255,447	+		LRK54_RS10235	0.79	-0.0
2,255,447	+		LRK54_RS10235	0.79	+0.1
2,255,447	+		LRK54_RS10235	0.79	-0.8
2,255,447	+		LRK54_RS10235	0.79	+1.6
2,255,447	+		LRK54_RS10235	0.79	-0.1
2,255,447	+		LRK54_RS10235	0.79	-1.2
2,255,447	+		LRK54_RS10235	0.79	-1.4
2,255,447	+		LRK54_RS10235	0.79	+0.4
2,255,447	+		LRK54_RS10235	0.79	+1.3
2,255,447	+		LRK54_RS10235	0.79	-0.7
2,255,447	+		LRK54_RS10235	0.79	-0.4
2,255,447	+		LRK54_RS10235	0.79	+1.3
2,255,447	+		LRK54_RS10235	0.79	+0.1
2,255,447	+		LRK54_RS10235	0.79	+0.2
2,255,447	+		LRK54_RS10235	0.79	+0.5
2,255,448	-		LRK54_RS10235	0.79	-0.1
2,255,448	-		LRK54_RS10235	0.79	-1.0
2,255,448	-		LRK54_RS10235	0.79	+0.4
2,255,448	-		LRK54_RS10235	0.79	-1.0
2,255,448	-		LRK54_RS10235	0.79	+0.7
2,255,448	-		LRK54_RS10235	0.79	-0.8
2,255,448	-		LRK54_RS10235	0.79	-0.5
2,255,448	-		LRK54_RS10235	0.79	-0.2
2,255,448	-		LRK54_RS10235	0.79	-0.7
2,255,448	-		LRK54_RS10235	0.79	-1.5
2,255,448	-		LRK54_RS10235	0.79	-0.3
2,255,448	-		LRK54_RS10235	0.79	+0.1
2,255,448	-		LRK54_RS10235	0.79	-0.0
2,255,450	+		LRK54_RS10235	0.80	+1.1
2,255,450	+		LRK54_RS10235	0.80	+0.2
2,255,450	+		LRK54_RS10235	0.80	+1.9
2,255,450	+		LRK54_RS10235	0.80	+0.3
2,255,450	+		LRK54_RS10235	0.80	+0.2
2,255,450	+		LRK54_RS10235	0.80	+0.5
2,255,450	+		LRK54_RS10235	0.80	+0.1
2,255,450	+		LRK54_RS10235	0.80	+0.3
2,255,450	+		LRK54_RS10235	0.80	-0.5
2,255,450	+		LRK54_RS10235	0.80	-0.7
2,255,450	+		LRK54_RS10235	0.80	+1.3
2,255,450	+		LRK54_RS10235	0.80	-1.5
2,255,450	+		LRK54_RS10235	0.80	-0.6
2,255,450	+		LRK54_RS10235	0.80	+0.1
2,255,451	-		LRK54_RS10235	0.80	+0.1
2,255,451	-		LRK54_RS10235	0.80	+0.0
2,255,451	-		LRK54_RS10235	0.80	+0.6
2,255,451	-		LRK54_RS10235	0.80	+0.2
2,255,451	-		LRK54_RS10235	0.80	-0.1
2,255,451	-		LRK54_RS10235	0.80	-1.2
2,255,451	-		LRK54_RS10235	0.80	+0.2
2,255,451	-		LRK54_RS10235	0.80	-0.1
2,255,451	-		LRK54_RS10235	0.80	-1.7
2,255,451	-		LRK54_RS10235	0.80	+0.2
2,255,451	-		LRK54_RS10235	0.80	-1.2
2,255,451	-		LRK54_RS10235	0.80	+0.8
2,255,451	-		LRK54_RS10235	0.80	-1.2
2,255,451	-		LRK54_RS10235	0.80	-0.2
2,255,451	-		LRK54_RS10235	0.80	-1.7
2,255,451	-		LRK54_RS10235	0.80	-1.4
2,255,453	+		LRK54_RS10235	0.80	+0.4
2,255,453	+		LRK54_RS10235	0.80	+0.8
2,255,453	+		LRK54_RS10235	0.80	-0.2
2,255,453	+		LRK54_RS10235	0.80	+0.0
2,255,453	+		LRK54_RS10235	0.80	+1.2
2,255,453	+		LRK54_RS10235	0.80	-0.2
2,255,453	+		LRK54_RS10235	0.80	-1.1
2,255,453	+		LRK54_RS10235	0.80	-0.7
2,255,453	+		LRK54_RS10235	0.80	-0.5
2,255,453	+		LRK54_RS10235	0.80	-0.9
2,255,453	+		LRK54_RS10235	0.80	-0.3
2,255,453	+		LRK54_RS10235	0.80	+0.5
2,255,454	-		LRK54_RS10235	0.80	+1.1
2,255,454	-		LRK54_RS10235	0.80	+0.3
2,255,454	-		LRK54_RS10235	0.80	+1.0
2,255,454	-		LRK54_RS10235	0.80	+0.1
2,255,454	-		LRK54_RS10235	0.80	+0.5
2,255,454	-		LRK54_RS10235	0.80	+0.0
2,255,454	-		LRK54_RS10235	0.80	-1.3
2,255,505	-		LRK54_RS10235	0.86	+0.2
2,255,546	+				+0.6
2,255,547	-				-1.2
2,255,547	-				-1.1
2,255,547	-				-0.7
2,255,582	+				-1.5
2,255,583	-				-0.1
2,255,606	+				+2.0
2,255,606	+				-0.7
2,255,606	+				+0.3
2,255,606	+				-0.2
2,255,606	+				-1.7
2,255,606	+				+0.0
2,255,606	+				+0.4
2,255,606	+				+0.2
2,255,606	+				+0.0
2,255,607	-				-0.2
2,255,607	-				-0.8
2,255,607	-				-0.3
2,255,607	-				-0.8
2,255,607	-				-1.1
2,255,607	-				+0.8
2,255,607	-				-1.6
2,255,607	-				+0.0
2,256,462	+				-0.9
2,256,482	-				-1.2