Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02710 and HSERO_RS02715 are separated by 329 nucleotides HSERO_RS02715 and HSERO_RS02720 overlap by 4 nucleotides HSERO_RS02720 and HSERO_RS02725 are separated by 30 nucleotides
HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487
_RS02710
HSERO_RS02715: HSERO_RS02715 - IclR family transcriptional regulator, at 600,817 to 601,590
_RS02715
HSERO_RS02720: HSERO_RS02720 - IclR family transcriptional regulator, at 601,587 to 602,435
_RS02720
HSERO_RS02725: HSERO_RS02725 - histidine kinase, at 602,466 to 605,003
_RS02725
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1 at 599.818 kb on + strand, within HSERO_RS02710 at 599.863 kb on + strand at 599.893 kb on + strand, within HSERO_RS02710 at 599.987 kb on + strand, within HSERO_RS02710 at 599.997 kb on + strand, within HSERO_RS02710 at 600.002 kb on + strand, within HSERO_RS02710 at 600.074 kb on + strand, within HSERO_RS02710 at 600.082 kb on - strand, within HSERO_RS02710 at 600.311 kb on + strand, within HSERO_RS02710 at 600.319 kb on - strand, within HSERO_RS02710 at 600.357 kb on - strand, within HSERO_RS02710 at 600.443 kb on - strand at 600.582 kb on + strand at 600.582 kb on + strand at 600.617 kb on + strand at 600.728 kb on + strand at 600.745 kb on - strand at 601.023 kb on + strand, within HSERO_RS02715 at 601.131 kb on + strand, within HSERO_RS02715 at 601.232 kb on + strand, within HSERO_RS02715 at 601.837 kb on + strand, within HSERO_RS02720 at 601.845 kb on - strand, within HSERO_RS02720 at 601.926 kb on - strand, within HSERO_RS02720 at 601.948 kb on - strand, within HSERO_RS02720 at 602.219 kb on - strand, within HSERO_RS02720 at 602.360 kb on + strand at 602.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 599,818 + HSERO_RS02710 0.30 +0.9 599,863 + +1.5 599,893 + HSERO_RS02710 0.38 -0.3 599,987 + HSERO_RS02710 0.48 +0.4 599,997 + HSERO_RS02710 0.49 -1.9 600,002 + HSERO_RS02710 0.49 +0.0 600,074 + HSERO_RS02710 0.57 +1.2 600,082 - HSERO_RS02710 0.58 +1.6 600,311 + HSERO_RS02710 0.82 -0.0 600,319 - HSERO_RS02710 0.82 -0.6 600,357 - HSERO_RS02710 0.86 +0.1 600,443 - -1.6 600,582 + -1.7 600,582 + -0.1 600,617 + +0.0 600,728 + +1.3 600,745 - +1.7 601,023 + HSERO_RS02715 0.27 -1.6 601,131 + HSERO_RS02715 0.41 -2.6 601,232 + HSERO_RS02715 0.54 +0.6 601,837 + HSERO_RS02720 0.29 -1.3 601,845 - HSERO_RS02720 0.30 +0.4 601,926 - HSERO_RS02720 0.40 -0.6 601,948 - HSERO_RS02720 0.43 +0.1 602,219 - HSERO_RS02720 0.74 +0.0 602,360 + -2.5 602,450 - +0.1
Or see this region's nucleotide sequence