Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25010 and BPHYT_RS25015 are separated by 239 nucleotides BPHYT_RS25015 and BPHYT_RS25020 are separated by 138 nucleotides BPHYT_RS25020 and BPHYT_RS25025 are separated by 305 nucleotides
BPHYT_RS25010: BPHYT_RS25010 - N5,N10-methylene tetrahydromethanopterin reductase, at 1,180,617 to 1,182,008
_RS25010
BPHYT_RS25015: BPHYT_RS25015 - XRE family transcriptional regulator, at 1,182,248 to 1,182,817
_RS25015
BPHYT_RS25020: BPHYT_RS25020 - phospholipid-binding protein, at 1,182,956 to 1,183,315
_RS25020
BPHYT_RS25025: BPHYT_RS25025 - acyl-CoA dehydrogenase, at 1,183,621 to 1,185,426
_RS25025
Position (kb) 1182
1183
1184 Strain fitness (log2 ratio) -1
0
1 at 1182.097 kb on - strand at 1182.201 kb on - strand at 1182.513 kb on + strand, within BPHYT_RS25015 at 1182.513 kb on + strand, within BPHYT_RS25015 at 1182.707 kb on + strand, within BPHYT_RS25015 at 1182.815 kb on + strand at 1182.815 kb on + strand at 1182.829 kb on + strand at 1183.248 kb on + strand, within BPHYT_RS25020 at 1183.414 kb on - strand at 1183.448 kb on - strand at 1183.834 kb on - strand, within BPHYT_RS25025
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 1,182,097 - -0.1 1,182,201 - -0.2 1,182,513 + BPHYT_RS25015 0.46 +0.6 1,182,513 + BPHYT_RS25015 0.46 -1.6 1,182,707 + BPHYT_RS25015 0.81 -0.1 1,182,815 + -1.1 1,182,815 + +0.4 1,182,829 + +0.8 1,183,248 + BPHYT_RS25020 0.81 -0.9 1,183,414 - +0.4 1,183,448 - -1.3 1,183,834 - BPHYT_RS25025 0.12 -0.8
Or see this region's nucleotide sequence