Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19085

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
4,281,259	+		BPHYT_RS19080	0.24	-3.0
4,281,287	+		BPHYT_RS19080	0.27	-0.6
4,281,287	+		BPHYT_RS19080	0.27	+0.2
4,281,288	-		BPHYT_RS19080	0.27	-0.2
4,281,313	+		BPHYT_RS19080	0.30	-0.5
4,281,314	-		BPHYT_RS19080	0.30	-0.0
4,281,314	-		BPHYT_RS19080	0.30	-0.3
4,281,346	+		BPHYT_RS19080	0.33	-2.1
4,281,346	+		BPHYT_RS19080	0.33	-0.0
4,281,346	+		BPHYT_RS19080	0.33	+0.1
4,281,346	+		BPHYT_RS19080	0.33	-1.2
4,281,346	+		BPHYT_RS19080	0.33	+0.1
4,281,347	-		BPHYT_RS19080	0.33	-0.3
4,281,347	-		BPHYT_RS19080	0.33	-0.9
4,281,347	-		BPHYT_RS19080	0.33	-0.6
4,281,347	-		BPHYT_RS19080	0.33	-0.2
4,281,347	-		BPHYT_RS19080	0.33	+0.3
4,281,349	+		BPHYT_RS19080	0.34	-0.3
4,281,349	+		BPHYT_RS19080	0.34	-0.2
4,281,349	+		BPHYT_RS19080	0.34	+0.1
4,281,349	+		BPHYT_RS19080	0.34	-1.6
4,281,350	-		BPHYT_RS19080	0.34	-0.0
4,281,350	-		BPHYT_RS19080	0.34	-0.9
4,281,403	+		BPHYT_RS19080	0.39	-0.8
4,281,419	-		BPHYT_RS19080	0.41	-0.1
4,281,419	-		BPHYT_RS19080	0.41	-0.6
4,281,428	-		BPHYT_RS19080	0.42	-0.1
4,281,428	-		BPHYT_RS19080	0.42	-0.1
4,281,449	-		BPHYT_RS19080	0.44	+1.8
4,281,508	+		BPHYT_RS19080	0.50	+1.5
4,281,509	-		BPHYT_RS19080	0.51	-0.2
4,281,560	-		BPHYT_RS19080	0.56	+0.1
4,281,560	-		BPHYT_RS19080	0.56	-0.3
4,281,613	+		BPHYT_RS19080	0.62	-1.0
4,281,614	-		BPHYT_RS19080	0.62	+0.4
4,281,625	+		BPHYT_RS19080	0.63	+0.4
4,281,669	+		BPHYT_RS19080	0.68	+0.0
4,281,669	+		BPHYT_RS19080	0.68	-0.3
4,281,669	+		BPHYT_RS19080	0.68	+0.1
4,281,670	-		BPHYT_RS19080	0.68	-0.2
4,281,670	-		BPHYT_RS19080	0.68	-0.0
4,281,670	-		BPHYT_RS19080	0.68	-0.4
4,281,818	-		BPHYT_RS19080	0.83	-1.0
4,281,837	-		BPHYT_RS19080	0.85	-0.3
4,281,926	+				-0.8
4,282,012	-				-2.4
4,282,028	-				-1.4
4,282,049	+				+0.3
4,282,083	-				-0.9
4,282,103	+				-0.1
4,282,103	+				-0.2
4,282,104	-				-0.8
4,282,119	+				+0.2
4,282,119	+				-0.5
4,282,211	-				-1.9
4,282,227	-				-2.0
4,282,227	-				-0.0
4,282,230	+				-2.4
4,282,231	-				-0.4
4,282,231	-				-1.4
4,282,257	+				-1.2
4,282,258	-				-2.0
4,282,294	-				-3.3
4,282,398	+		BPHYT_RS19085	0.14	-1.4
4,282,512	+		BPHYT_RS19085	0.23	+0.5
4,282,633	+		BPHYT_RS19085	0.34	-1.8
4,282,819	+		BPHYT_RS19085	0.50	+0.5
4,282,819	+		BPHYT_RS19085	0.50	-1.4
4,282,842	+		BPHYT_RS19085	0.52	-2.5
4,282,879	+		BPHYT_RS19085	0.55	-1.9
4,282,880	-		BPHYT_RS19085	0.56	-1.0
4,283,160	+		BPHYT_RS19085	0.80	-2.0
4,283,160	+		BPHYT_RS19085	0.80	-1.4
4,283,160	+		BPHYT_RS19085	0.80	-2.0
4,283,161	-		BPHYT_RS19085	0.80	-1.8
4,283,161	-		BPHYT_RS19085	0.80	-2.0
4,283,488	+				-1.6
4,283,517	-				-2.2
4,283,894	+		BPHYT_RS19090	0.23	+0.2
4,284,262	+				-0.8
4,284,262	+		BPHYT_RS19090	0.47	-0.2
4,284,263	-		BPHYT_RS19090	0.47	-0.1
4,284,263	-		BPHYT_RS19090	0.47	-0.8
4,284,272	-		BPHYT_RS19090	0.48	+0.4
4,284,320	+		BPHYT_RS19090	0.51	-0.4