Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18310

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
4,117,233	-		BPHYT_RS18305	0.83	-0.3
4,117,355	+		BPHYT_RS18305	0.87	-0.2
4,117,355	+		BPHYT_RS18305	0.87	+0.2
4,117,356	-		BPHYT_RS18305	0.87	+0.2
4,117,356	-		BPHYT_RS18305	0.87	-0.0
4,117,368	-		BPHYT_RS18305	0.87	+0.2
4,117,385	+		BPHYT_RS18305	0.87	+0.8
4,117,386	-		BPHYT_RS18305	0.87	-0.3
4,117,511	+				+0.6
4,117,511	+				+0.1
4,117,512	-				+0.1
4,117,634	+				+0.3
4,117,635	-				-0.0
4,117,730	+				+0.1
4,117,731	-				-0.1
4,117,909	+				-0.3
4,117,909	+				-0.5
4,118,225	+				-0.3
4,118,225	+				-0.1
4,118,225	+				+0.2
4,118,226	-				+0.1
4,118,226	-				-1.6
4,118,257	-				-1.0
4,118,257	-				-0.2
4,118,549	+		BPHYT_RS18310	0.21	-0.8
4,118,549	+		BPHYT_RS18310	0.21	-0.9
4,118,550	-		BPHYT_RS18310	0.22	-0.0
4,118,550	-		BPHYT_RS18310	0.22	-0.6
4,118,550	-		BPHYT_RS18310	0.22	-0.5
4,118,550	-		BPHYT_RS18310	0.22	-1.2
4,118,550	-		BPHYT_RS18310	0.22	-0.5
4,118,550	-		BPHYT_RS18310	0.22	-0.3
4,118,804	+				+0.4
4,118,804	+		BPHYT_RS18310	0.33	-0.8
4,118,805	-		BPHYT_RS18310	0.33	+0.6
4,119,072	-		BPHYT_RS18310	0.44	-0.4
4,119,072	-		BPHYT_RS18310	0.44	-0.1
4,119,098	+		BPHYT_RS18310	0.46	+1.3
4,119,212	+		BPHYT_RS18310	0.51	-1.2
4,119,213	-		BPHYT_RS18310	0.51	-1.1
4,119,245	+		BPHYT_RS18310	0.52	+0.3
4,119,246	-		BPHYT_RS18310	0.52	-0.7
4,119,665	+		BPHYT_RS18310	0.70	-0.2
4,119,666	-				+1.4
4,119,909	-		BPHYT_RS18310	0.81	+0.3
4,120,163	+				-2.8
4,120,163	+				+0.2
4,120,200	+				-0.5
4,120,200	+				-0.1
4,120,307	+				+1.0
4,120,407	-				-0.0
4,120,407	-				+0.0
4,120,515	+				+0.5
4,120,516	-				+1.3
4,120,516	-				+0.1
4,120,516	-				-0.0
4,120,719	+				+0.0
4,120,720	-				+0.0
4,120,965	+		BPHYT_RS18315	0.25	+0.1
4,120,998	+		BPHYT_RS18315	0.28	-2.4
4,120,999	-		BPHYT_RS18315	0.28	+0.2
4,121,094	-		BPHYT_RS18315	0.36	+0.6
4,121,094	-		BPHYT_RS18315	0.36	-1.9
4,121,136	+		BPHYT_RS18315	0.39	-0.4
4,121,136	+		BPHYT_RS18315	0.39	-0.3
4,121,136	+		BPHYT_RS18315	0.39	+0.2
4,121,136	+		BPHYT_RS18315	0.39	+0.1
4,121,137	-		BPHYT_RS18315	0.39	-0.4
4,121,137	-		BPHYT_RS18315	0.39	+0.2
4,121,163	+		BPHYT_RS18315	0.41	-0.1
4,121,163	+		BPHYT_RS18315	0.41	+1.6
4,121,164	-		BPHYT_RS18315	0.41	+0.7
4,121,164	-		BPHYT_RS18315	0.41	+0.7