Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17935

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
4,048,784	+		BPHYT_RS17930	0.38	-0.2
4,048,784	+		BPHYT_RS17930	0.38	-0.3
4,048,785	-		BPHYT_RS17930	0.39	+0.1
4,048,785	-		BPHYT_RS17930	0.39	+0.1
4,048,785	-		BPHYT_RS17930	0.39	-0.4
4,048,785	-		BPHYT_RS17930	0.39	+0.1
4,048,847	+		BPHYT_RS17930	0.43	+0.5
4,048,848	-		BPHYT_RS17930	0.44	+0.1
4,048,900	+		BPHYT_RS17930	0.48	-0.2
4,048,901	-		BPHYT_RS17930	0.48	-0.2
4,049,033	+		BPHYT_RS17930	0.58	-1.4
4,049,034	-		BPHYT_RS17930	0.58	-0.0
4,049,123	+		BPHYT_RS17930	0.65	-0.2
4,049,124	-		BPHYT_RS17930	0.65	-0.4
4,049,124	-		BPHYT_RS17930	0.65	+0.2
4,049,124	-		BPHYT_RS17930	0.65	-1.1
4,049,124	-		BPHYT_RS17930	0.65	-0.3
4,049,258	+		BPHYT_RS17930	0.76	+0.3
4,049,259	-		BPHYT_RS17930	0.76	-1.5
4,049,268	-		BPHYT_RS17930	0.77	-0.2
4,049,301	+		BPHYT_RS17930	0.79	-0.2
4,049,315	+		BPHYT_RS17930	0.81	+0.4
4,049,315	+		BPHYT_RS17930	0.81	-0.1
4,049,420	+		BPHYT_RS17930	0.89	+0.3
4,049,444	+				-2.3
4,049,445	-				+0.1
4,049,485	+				+0.0
4,049,486	-				-0.2
4,049,568	+				+0.1
4,049,569	-				+0.0
4,049,622	+				+0.1
4,049,796	+		BPHYT_RS17935	0.21	+1.7
4,049,973	+		BPHYT_RS17935	0.46	+1.2
4,049,973	+		BPHYT_RS17935	0.46	+0.2
4,049,973	+		BPHYT_RS17935	0.46	+0.1
4,049,973	+		BPHYT_RS17935	0.46	+0.4
4,049,974	-		BPHYT_RS17935	0.46	-0.6
4,049,974	-		BPHYT_RS17935	0.46	-0.2
4,049,974	-		BPHYT_RS17935	0.46	+1.0
4,049,997	+		BPHYT_RS17935	0.50	-0.3
4,049,998	-		BPHYT_RS17935	0.50	+0.3
4,050,010	-		BPHYT_RS17935	0.51	+0.2
4,050,010	-		BPHYT_RS17935	0.51	+1.6
4,050,212	+		BPHYT_RS17935	0.80	+1.1
4,050,551	+		BPHYT_RS17940	0.19	+0.9
4,050,551	+		BPHYT_RS17940	0.19	-0.7
4,050,551	+		BPHYT_RS17940	0.19	+0.2
4,050,551	+		BPHYT_RS17940	0.19	-0.1
4,050,551	+		BPHYT_RS17940	0.19	+0.4
4,050,551	+		BPHYT_RS17940	0.19	-0.1
4,050,552	-		BPHYT_RS17940	0.19	-0.1
4,050,552	-		BPHYT_RS17940	0.19	+0.0
4,050,552	-		BPHYT_RS17940	0.19	-0.1
4,050,552	-		BPHYT_RS17940	0.19	+0.0
4,050,555	+		BPHYT_RS17940	0.20	-1.3
4,050,555	+		BPHYT_RS17940	0.20	+0.8
4,050,555	+		BPHYT_RS17940	0.20	+0.4
4,050,627	-		BPHYT_RS17940	0.27	+1.1
4,050,749	+		BPHYT_RS17940	0.39	+0.8
4,050,821	+		BPHYT_RS17940	0.46	-0.5
4,050,821	+		BPHYT_RS17940	0.46	-0.4
4,050,822	-		BPHYT_RS17940	0.47	-0.0
4,050,822	-		BPHYT_RS17940	0.47	+0.3
4,050,822	-		BPHYT_RS17940	0.47	+0.1
4,050,923	+		BPHYT_RS17940	0.57	-0.9
4,050,923	+		BPHYT_RS17940	0.57	-0.6
4,050,924	-		BPHYT_RS17940	0.57	+0.1
4,050,971	+		BPHYT_RS17940	0.62	-2.6
4,050,971	+				+0.8
4,050,971	+		BPHYT_RS17940	0.62	-0.9
4,050,972	-		BPHYT_RS17940	0.62	+0.5
4,051,076	+		BPHYT_RS17940	0.72	+0.5
4,051,088	+		BPHYT_RS17940	0.73	-0.5
4,051,088	+		BPHYT_RS17940	0.73	+0.6
4,051,089	-		BPHYT_RS17940	0.73	-0.2
4,051,089	-		BPHYT_RS17940	0.73	-0.6
4,051,089	-		BPHYT_RS17940	0.73	-0.5
4,051,089	-		BPHYT_RS17940	0.73	+0.4
4,051,106	+		BPHYT_RS17940	0.75	-1.0
4,051,106	+		BPHYT_RS17940	0.75	-0.2
4,051,187	+		BPHYT_RS17940	0.83	+0.4
4,051,188	-		BPHYT_RS17940	0.83	+0.0