Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16985

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
3,851,674	-		BPHYT_RS16980	0.75	-0.1
3,852,214	-				+0.9
3,852,214	-				+1.2
3,852,214	-				-1.2
3,852,301	+				+0.5
3,852,301	+				-1.2
3,852,396	-				+0.6
3,852,485	+		BPHYT_RS16985	0.12	+0.2
3,852,485	+		BPHYT_RS16985	0.12	+0.2
3,852,485	+		BPHYT_RS16985	0.12	+0.8
3,852,531	+		BPHYT_RS16985	0.19	-0.5
3,852,532	-		BPHYT_RS16985	0.19	-0.3
3,852,532	-		BPHYT_RS16985	0.19	+0.0
3,852,605	+		BPHYT_RS16985	0.32	-0.5
3,852,608	+		BPHYT_RS16985	0.32	+0.2
3,852,806	+		BPHYT_RS16985	0.65	-0.3
3,852,807	-		BPHYT_RS16985	0.65	+0.1
3,853,008	-				+0.1
3,853,008	-				+0.3
3,853,008	-				-0.2
3,853,242	+		BPHYT_RS16990	0.16	+2.5
3,853,417	+		BPHYT_RS16990	0.29	+3.6
3,853,417	+		BPHYT_RS16990	0.29	+3.5
3,853,418	-		BPHYT_RS16990	0.29	+3.7
3,853,612	+		BPHYT_RS16990	0.43	+3.4
3,853,613	-		BPHYT_RS16990	0.43	+2.9