Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12825

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
2,921,288	+				+0.1
2,921,289	-				-0.5
2,921,331	-				-0.1
2,921,351	+				+0.4
2,921,352	-				-0.1
2,921,352	-				-1.1
2,921,381	+				-0.2
2,921,418	-				+0.5
2,921,418	-				-1.1
2,921,418	-				-0.2
2,921,418	-				-0.3
2,921,489	-				-1.2
2,921,591	+				-0.1
2,922,373	+		BPHYT_RS12825	0.76	-0.1
2,922,373	+		BPHYT_RS12825	0.76	+0.8
2,922,508	+				-0.1
2,922,509	-				-0.7
2,922,509	-				+0.1
2,922,624	-				+0.9
2,922,624	-				+0.0
2,922,653	-				-0.3
2,922,690	+				+0.4
2,922,731	-				+0.3
2,922,828	+				-0.2
2,922,871	-				+0.6
2,922,871	-				-0.8
2,923,121	-		BPHYT_RS12830	0.16	-0.1
2,923,191	+		BPHYT_RS12830	0.20	-0.7
2,923,455	+		BPHYT_RS12830	0.35	+1.6
2,923,500	+		BPHYT_RS12830	0.37	+0.1
2,923,501	-		BPHYT_RS12830	0.37	-2.0
2,923,501	-		BPHYT_RS12830	0.37	-1.2
2,923,501	-		BPHYT_RS12830	0.37	+0.1
2,923,501	-		BPHYT_RS12830	0.37	+0.0