Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11215

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
2,550,249	-		BPHYT_RS11210	0.49	-2.1
2,550,275	+		BPHYT_RS11210	0.51	-0.6
2,550,276	-		BPHYT_RS11210	0.51	-1.6
2,550,575	+		BPHYT_RS11210	0.80	-0.8
2,550,575	+		BPHYT_RS11210	0.80	+0.2
2,550,647	+		BPHYT_RS11210	0.86	+1.0
2,550,918	-				-1.9
2,550,960	-		BPHYT_RS11215	0.11	-2.3
2,550,960	-		BPHYT_RS11215	0.11	-2.0
2,551,031	-		BPHYT_RS11215	0.15	-1.4
2,551,035	-		BPHYT_RS11215	0.16	-1.4
2,551,035	-		BPHYT_RS11215	0.16	-1.9
2,551,323	-		BPHYT_RS11215	0.34	-1.9
2,551,454	-		BPHYT_RS11215	0.42	-1.5
2,551,766	-		BPHYT_RS11215	0.61	-2.1
2,551,766	-		BPHYT_RS11215	0.61	-1.5
2,551,766	-		BPHYT_RS11215	0.61	-0.4
2,551,766	-		BPHYT_RS11215	0.61	-3.4
2,551,766	-		BPHYT_RS11215	0.61	-2.4
2,552,231	+				+0.4
2,552,232	-				+1.7
2,552,232	-				-1.7
2,552,232	-				-1.4
2,552,321	-				-0.8
2,552,549	+				+0.5
2,552,696	-				-1.6
2,552,696	-				-3.3
2,552,696	-				-2.1
2,552,696	-				-0.9
2,553,117	-		BPHYT_RS11220	0.44	-1.5
2,553,178	+		BPHYT_RS11220	0.50	+0.6