Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07565

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07555 and BPHYT_RS07560 are separated by 25 nucleotidesBPHYT_RS07560 and BPHYT_RS07565 are separated by 62 nucleotidesBPHYT_RS07565 and BPHYT_RS07570 are separated by 17 nucleotidesBPHYT_RS07570 and BPHYT_RS07575 are separated by 85 nucleotides BPHYT_RS07555: BPHYT_RS07555 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 1,717,210 to 1,718,730 _RS07555 BPHYT_RS07560: BPHYT_RS07560 - histidine utilization repressor, at 1,718,756 to 1,719,451 _RS07560 BPHYT_RS07565: BPHYT_RS07565 - urocanate hydratase, at 1,719,514 to 1,721,202 _RS07565 BPHYT_RS07570: BPHYT_RS07570 - hypothetical protein, at 1,721,220 to 1,721,846 _RS07570 BPHYT_RS07575: BPHYT_RS07575 - imidazolonepropionase, at 1,721,932 to 1,723,155 _RS07575 Position (kb) 1719 1720 1721 1722Strain fitness (log2 ratio) -1 0 1at 1719.944 kb on - strand, within BPHYT_RS07565at 1719.977 kb on - strand, within BPHYT_RS07565at 1720.573 kb on + strand, within BPHYT_RS07565at 1720.574 kb on - strand, within BPHYT_RS07565at 1720.574 kb on - strand, within BPHYT_RS07565at 1720.728 kb on + strand, within BPHYT_RS07565at 1721.636 kb on - strand, within BPHYT_RS07570at 1722.197 kb on - strand, within BPHYT_RS07575

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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1,719,944 - BPHYT_RS07565 0.25 -1.7
1,719,977 - BPHYT_RS07565 0.27 -0.2
1,720,573 + BPHYT_RS07565 0.63 -0.4
1,720,574 - BPHYT_RS07565 0.63 -0.5
1,720,574 - BPHYT_RS07565 0.63 -0.7
1,720,728 + BPHYT_RS07565 0.72 -0.7
1,721,636 - BPHYT_RS07570 0.66 +0.2
1,722,197 - BPHYT_RS07575 0.22 -0.0

Or see this region's nucleotide sequence