Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05905

Experiment: Cephalothin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2 mg/ml
1,340,384	+				+0.0
1,340,510	-				+0.6
1,340,759	+		BPHYT_RS05900	0.66	-0.2
1,340,759	+		BPHYT_RS05900	0.66	-0.4
1,340,922	-				+0.0
1,340,922	-				-0.0
1,340,954	-				-0.3
1,340,954	-				-0.9
1,340,986	+				-0.6
1,340,986	+				+0.3
1,341,046	-				-0.1
1,341,049	+				-0.1
1,341,050	-				-1.4
1,341,050	-				-0.3
1,341,111	+				+0.1
1,341,153	+				+0.5
1,341,168	-				-0.8
1,341,249	+				-0.1
1,341,250	-				+0.9
1,341,329	-				+0.2
1,341,452	-		BPHYT_RS05905	0.39	-1.9
1,341,484	+		BPHYT_RS05905	0.56	-0.6
1,341,725	+				+0.8
1,341,726	-				+0.9
1,341,755	+		BPHYT_RS05910	0.15	-0.1
1,341,817	+		BPHYT_RS05910	0.29	+0.0
1,341,817	+		BPHYT_RS05910	0.29	+1.4
1,341,873	+		BPHYT_RS05910	0.43	+0.2
1,341,929	-		BPHYT_RS05910	0.56	+1.2
1,342,120	+				+0.2
1,342,120	+				+0.3
1,342,121	-				-0.1
1,342,181	-				-1.1
1,342,195	+				-0.9
1,342,196	-				+0.5
1,342,415	-				-0.4
1,342,415	-				+0.4
1,342,415	-				+0.5
1,342,426	+				-0.2
1,342,528	+				+0.6
1,342,529	-				+0.4