Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03890 and BPHYT_RS03895 are separated by 8 nucleotides BPHYT_RS03895 and BPHYT_RS03900 are separated by 353 nucleotides BPHYT_RS03900 and BPHYT_RS03905 are separated by 251 nucleotides BPHYT_RS03905 and BPHYT_RS03910 are separated by 60 nucleotides
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
BPHYT_RS03895: BPHYT_RS03895 - hypothetical protein, at 883,800 to 884,000
_RS03895
BPHYT_RS03900: BPHYT_RS03900 - phospholipid-binding protein, at 884,354 to 884,707
_RS03900
BPHYT_RS03905: BPHYT_RS03905 - hypothetical protein, at 884,959 to 885,207
_RS03905
BPHYT_RS03910: BPHYT_RS03910 - membrane protein, at 885,268 to 886,056
_RS03910
Position (kb) 884
885 Strain fitness (log2 ratio) -1
0
1
2 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.998 kb on + strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 884.011 kb on + strand at 884.027 kb on + strand at 884.058 kb on + strand at 884.059 kb on - strand at 884.059 kb on - strand at 884.115 kb on + strand at 884.115 kb on + strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.232 kb on + strand at 884.317 kb on + strand at 884.420 kb on + strand, within BPHYT_RS03900 at 884.706 kb on - strand at 884.706 kb on - strand at 884.921 kb on - strand at 884.981 kb on - strand at 884.981 kb on - strand at 884.983 kb on - strand at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.140 kb on - strand, within BPHYT_RS03905 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.683 kb on - strand, within BPHYT_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 883,397 + BPHYT_RS03890 0.74 +0.2 883,397 + BPHYT_RS03890 0.74 +0.3 883,398 - BPHYT_RS03890 0.74 -0.1 883,398 - BPHYT_RS03890 0.74 +0.4 883,574 + BPHYT_RS03890 0.85 +0.3 883,574 + BPHYT_RS03890 0.85 +0.3 883,575 - BPHYT_RS03890 0.85 +0.0 883,575 - BPHYT_RS03890 0.85 -0.1 883,888 + BPHYT_RS03895 0.44 +0.3 883,888 + BPHYT_RS03895 0.44 +0.2 883,888 + BPHYT_RS03895 0.44 -0.1 883,998 + -0.7 883,999 - +0.2 883,999 - +0.9 883,999 - +0.0 883,999 - +0.3 883,999 - -1.2 884,011 + -0.1 884,027 + -0.8 884,058 + +0.9 884,059 - +0.4 884,059 - -0.6 884,115 + +1.6 884,115 + +0.2 884,116 - -0.4 884,116 - +0.1 884,116 - -0.1 884,232 + -0.6 884,317 + +0.0 884,420 + BPHYT_RS03900 0.19 -0.7 884,706 - +0.0 884,706 - +0.4 884,921 - +0.1 884,981 - -0.9 884,981 - +0.4 884,983 - +0.0 885,139 + BPHYT_RS03905 0.72 +0.9 885,139 + BPHYT_RS03905 0.72 -1.1 885,139 + BPHYT_RS03905 0.72 -0.6 885,139 + BPHYT_RS03905 0.72 +0.1 885,139 + BPHYT_RS03905 0.72 -0.2 885,140 - BPHYT_RS03905 0.73 +0.7 885,356 + BPHYT_RS03910 0.11 -0.6 885,356 + BPHYT_RS03910 0.11 +0.8 885,356 + BPHYT_RS03910 0.11 +1.4 885,357 - BPHYT_RS03910 0.11 +2.5 885,357 - BPHYT_RS03910 0.11 +0.4 885,682 + BPHYT_RS03910 0.52 -0.1 885,682 + BPHYT_RS03910 0.52 +1.5 885,683 - BPHYT_RS03910 0.53 -0.4
Or see this region's nucleotide sequence