Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02595 and BPHYT_RS02600 overlap by 4 nucleotides BPHYT_RS02600 and BPHYT_RS02605 are separated by 145 nucleotides BPHYT_RS02605 and BPHYT_RS02610 are separated by 22 nucleotides BPHYT_RS02610 and BPHYT_RS02615 are separated by 94 nucleotides BPHYT_RS02615 and BPHYT_RS02620 overlap by 28 nucleotides
BPHYT_RS02595: BPHYT_RS02595 - sulfurtransferase, at 589,582 to 590,007
_RS02595
BPHYT_RS02600: BPHYT_RS02600 - glutaredoxin, at 590,004 to 590,267
_RS02600
BPHYT_RS02605: BPHYT_RS02605 - protein-export protein SecB, at 590,413 to 590,883
_RS02605
BPHYT_RS02610: BPHYT_RS02610 - glycerol-3-phosphate dehydrogenase [NAD(P)+], at 590,906 to 591,904
_RS02610
BPHYT_RS02615: BPHYT_RS02615 - Appr-1-p processing protein, at 591,999 to 592,547
_RS02615
BPHYT_RS02620: BPHYT_RS02620 - tRNA methyltransferase, at 592,520 to 592,990
_RS02620
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.101 kb on + strand, within BPHYT_RS02600 at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.390 kb on - strand at 590.390 kb on - strand at 590.458 kb on + strand at 590.458 kb on + strand at 590.819 kb on - strand, within BPHYT_RS02605 at 590.881 kb on + strand at 590.882 kb on - strand at 591.434 kb on + strand, within BPHYT_RS02610 at 591.435 kb on - strand, within BPHYT_RS02610 at 591.721 kb on + strand, within BPHYT_RS02610 at 591.721 kb on + strand, within BPHYT_RS02610 at 591.722 kb on - strand, within BPHYT_RS02610 at 591.902 kb on + strand at 591.902 kb on + strand at 591.903 kb on - strand at 592.036 kb on + strand at 592.036 kb on + strand at 592.300 kb on - strand, within BPHYT_RS02615 at 592.374 kb on + strand, within BPHYT_RS02615 at 592.403 kb on + strand, within BPHYT_RS02615 at 592.579 kb on + strand, within BPHYT_RS02620 at 592.580 kb on - strand, within BPHYT_RS02620 at 592.830 kb on + strand, within BPHYT_RS02620 at 592.830 kb on + strand, within BPHYT_RS02620 at 592.840 kb on - strand, within BPHYT_RS02620 at 592.840 kb on - strand, within BPHYT_RS02620
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 590,022 + +0.0 590,022 + -0.2 590,022 + +1.4 590,022 + -0.8 590,022 + -0.0 590,101 + BPHYT_RS02600 0.37 +0.2 590,389 + +0.1 590,389 + -0.1 590,389 + +0.1 590,389 + +0.4 590,390 - -0.4 590,390 - -2.1 590,458 + +0.7 590,458 + -2.9 590,819 - BPHYT_RS02605 0.86 -0.4 590,881 + -0.3 590,882 - -0.1 591,434 + BPHYT_RS02610 0.53 -1.2 591,435 - BPHYT_RS02610 0.53 -1.3 591,721 + BPHYT_RS02610 0.82 -1.4 591,721 + BPHYT_RS02610 0.82 -0.8 591,722 - BPHYT_RS02610 0.82 -0.7 591,902 + -0.2 591,902 + +1.9 591,903 - +0.8 592,036 + +0.2 592,036 + -0.1 592,300 - BPHYT_RS02615 0.55 +0.5 592,374 + BPHYT_RS02615 0.68 -0.3 592,403 + BPHYT_RS02615 0.74 -1.9 592,579 + BPHYT_RS02620 0.13 -0.0 592,580 - BPHYT_RS02620 0.13 +0.7 592,830 + BPHYT_RS02620 0.66 +0.5 592,830 + BPHYT_RS02620 0.66 +0.2 592,840 - BPHYT_RS02620 0.68 +0.1 592,840 - BPHYT_RS02620 0.68 -0.1
Or see this region's nucleotide sequence