Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02185 and BPHYT_RS02190 are separated by 260 nucleotides BPHYT_RS02190 and BPHYT_RS02195 are separated by 181 nucleotides BPHYT_RS02195 and BPHYT_RS02200 are separated by 32 nucleotides
BPHYT_RS02185: BPHYT_RS02185 - hypothetical protein, at 502,653 to 503,165
_RS02185
BPHYT_RS02190: BPHYT_RS02190 - hypothetical protein, at 503,426 to 503,971
_RS02190
BPHYT_RS02195: BPHYT_RS02195 - hypothetical protein, at 504,153 to 504,689
_RS02195
BPHYT_RS02200: BPHYT_RS02200 - hypothetical protein, at 504,722 to 506,923
_RS02200
Position (kb) 503
504 Strain fitness (log2 ratio) -1
0
1 at 502.516 kb on + strand at 502.680 kb on - strand at 502.847 kb on + strand, within BPHYT_RS02185 at 502.848 kb on - strand, within BPHYT_RS02185 at 503.100 kb on + strand, within BPHYT_RS02185 at 503.178 kb on + strand at 503.187 kb on + strand at 503.188 kb on - strand at 503.278 kb on - strand at 503.437 kb on - strand at 503.504 kb on + strand, within BPHYT_RS02190 at 503.505 kb on - strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.545 kb on + strand, within BPHYT_RS02190 at 503.546 kb on - strand, within BPHYT_RS02190 at 503.761 kb on - strand, within BPHYT_RS02190 at 503.774 kb on + strand, within BPHYT_RS02190 at 503.805 kb on - strand, within BPHYT_RS02190 at 503.993 kb on + strand at 504.222 kb on + strand, within BPHYT_RS02195 at 504.286 kb on - strand, within BPHYT_RS02195 at 504.502 kb on - strand, within BPHYT_RS02195 at 504.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 502,516 + -0.1 502,680 - -0.8 502,847 + BPHYT_RS02185 0.38 -0.4 502,848 - BPHYT_RS02185 0.38 -0.5 503,100 + BPHYT_RS02185 0.87 -1.0 503,178 + -0.4 503,187 + +0.0 503,188 - -0.7 503,278 - -0.4 503,437 - -0.9 503,504 + BPHYT_RS02190 0.14 -0.8 503,505 - BPHYT_RS02190 0.14 +0.7 503,545 + BPHYT_RS02190 0.22 -0.4 503,545 + BPHYT_RS02190 0.22 -0.0 503,545 + BPHYT_RS02190 0.22 -1.1 503,546 - BPHYT_RS02190 0.22 -1.1 503,761 - BPHYT_RS02190 0.61 -1.2 503,774 + BPHYT_RS02190 0.64 +0.1 503,805 - BPHYT_RS02190 0.69 -1.7 503,993 + -0.7 504,222 + BPHYT_RS02195 0.13 +0.1 504,286 - BPHYT_RS02195 0.25 -0.0 504,502 - BPHYT_RS02195 0.65 +0.2 504,877 + +0.7
Or see this region's nucleotide sequence