Experiment: Cephalothin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01635 and BPHYT_RS01640 are separated by 478 nucleotides BPHYT_RS01640 and BPHYT_RS01645 are separated by 677 nucleotides
BPHYT_RS01635: BPHYT_RS01635 - ATP-dependent protease subunit HslV, at 371,479 to 372,015
_RS01635
BPHYT_RS01640: BPHYT_RS01640 - molecular chaperone DnaK, at 372,494 to 372,913
_RS01640
BPHYT_RS01645: BPHYT_RS01645 - cobalamin biosynthesis protein CobW, at 373,591 to 374,679
_RS01645
Position (kb) 372
373 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 371.695 kb on - strand, within BPHYT_RS01635 at 372.016 kb on - strand at 372.016 kb on - strand at 372.064 kb on - strand at 372.147 kb on + strand at 372.170 kb on - strand at 372.191 kb on + strand at 372.192 kb on - strand at 372.295 kb on + strand at 372.296 kb on - strand at 372.304 kb on + strand at 372.305 kb on - strand at 372.371 kb on + strand at 372.371 kb on + strand at 372.372 kb on - strand at 372.399 kb on - strand at 372.399 kb on - strand at 372.948 kb on - strand at 372.948 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 373.077 kb on - strand at 373.228 kb on - strand at 373.272 kb on - strand at 373.272 kb on - strand at 373.272 kb on - strand at 373.277 kb on - strand at 373.277 kb on - strand at 373.277 kb on - strand at 373.293 kb on - strand at 373.293 kb on - strand at 373.320 kb on - strand at 373.333 kb on - strand at 373.344 kb on - strand at 373.386 kb on - strand at 373.386 kb on - strand at 373.386 kb on - strand at 373.451 kb on - strand at 373.495 kb on + strand at 373.496 kb on - strand at 373.496 kb on - strand at 373.650 kb on + strand at 373.763 kb on + strand, within BPHYT_RS01645 at 373.764 kb on - strand, within BPHYT_RS01645 at 373.776 kb on + strand, within BPHYT_RS01645 at 373.778 kb on + strand, within BPHYT_RS01645 at 373.778 kb on + strand, within BPHYT_RS01645 at 373.779 kb on - strand, within BPHYT_RS01645 at 373.779 kb on - strand, within BPHYT_RS01645 at 373.799 kb on + strand, within BPHYT_RS01645 at 373.800 kb on - strand, within BPHYT_RS01645 at 373.800 kb on - strand, within BPHYT_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml remove 371,695 - BPHYT_RS01635 0.40 -2.0 372,016 - +0.8 372,016 - -0.2 372,064 - -0.2 372,147 + -1.1 372,170 - -1.6 372,191 + -1.4 372,192 - +0.1 372,295 + -0.5 372,296 - -0.2 372,304 + -0.2 372,305 - -0.3 372,371 + +2.8 372,371 + -1.2 372,372 - -0.7 372,399 - -0.4 372,399 - -0.4 372,948 - +0.0 372,948 - -0.2 372,952 - +1.2 372,952 - +0.2 372,952 - -0.9 373,077 - +0.1 373,228 - -1.5 373,272 - -1.1 373,272 - +0.0 373,272 - -0.3 373,277 - +0.2 373,277 - -0.8 373,277 - -0.4 373,293 - -0.7 373,293 - -0.1 373,320 - +0.1 373,333 - +0.5 373,344 - +1.8 373,386 - +0.7 373,386 - -0.4 373,386 - -0.2 373,451 - +0.2 373,495 + -0.4 373,496 - +0.1 373,496 - -0.3 373,650 + -0.5 373,763 + BPHYT_RS01645 0.16 +0.5 373,764 - BPHYT_RS01645 0.16 +0.1 373,776 + BPHYT_RS01645 0.17 -0.8 373,778 + BPHYT_RS01645 0.17 -0.5 373,778 + BPHYT_RS01645 0.17 +0.6 373,779 - BPHYT_RS01645 0.17 -0.4 373,779 - BPHYT_RS01645 0.17 +0.4 373,799 + BPHYT_RS01645 0.19 -0.6 373,800 - BPHYT_RS01645 0.19 +0.2 373,800 - BPHYT_RS01645 0.19 -0.8
Or see this region's nucleotide sequence