Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01635

Experiment: Cephalothin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01630 and BPHYT_RS01635 are separated by 9 nucleotidesBPHYT_RS01635 and BPHYT_RS01640 are separated by 478 nucleotides BPHYT_RS01630: BPHYT_RS01630 - ATP-dependent protease ATPase subunit HslU, at 370,123 to 371,469 _RS01630 BPHYT_RS01635: BPHYT_RS01635 - ATP-dependent protease subunit HslV, at 371,479 to 372,015 _RS01635 BPHYT_RS01640: BPHYT_RS01640 - molecular chaperone DnaK, at 372,494 to 372,913 _RS01640 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 371.199 kb on - strand, within BPHYT_RS01630at 371.695 kb on - strand, within BPHYT_RS01635at 372.016 kb on - strandat 372.016 kb on - strandat 372.064 kb on - strandat 372.147 kb on + strandat 372.170 kb on - strandat 372.191 kb on + strandat 372.192 kb on - strandat 372.295 kb on + strandat 372.296 kb on - strandat 372.304 kb on + strandat 372.305 kb on - strandat 372.371 kb on + strandat 372.371 kb on + strandat 372.372 kb on - strandat 372.399 kb on - strandat 372.399 kb on - strandat 372.948 kb on - strandat 372.948 kb on - strandat 372.952 kb on - strandat 372.952 kb on - strandat 372.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2 mg/ml
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371,199 - BPHYT_RS01630 0.80 -0.7
371,695 - BPHYT_RS01635 0.40 -2.0
372,016 - +0.8
372,016 - -0.2
372,064 - -0.2
372,147 + -1.1
372,170 - -1.6
372,191 + -1.4
372,192 - +0.1
372,295 + -0.5
372,296 - -0.2
372,304 + -0.2
372,305 - -0.3
372,371 + +2.8
372,371 + -1.2
372,372 - -0.7
372,399 - -0.4
372,399 - -0.4
372,948 - +0.0
372,948 - -0.2
372,952 - +1.2
372,952 - +0.2
372,952 - -0.9

Or see this region's nucleotide sequence