Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29085

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29080 and AO356_29085 are separated by 99 nucleotidesAO356_29085 and AO356_29090 are separated by 20 nucleotidesAO356_29090 and AO356_29095 overlap by 4 nucleotides AO356_29080: AO356_29080 - ornithine cyclodeaminase, at 6,761,946 to 6,762,956 _29080 AO356_29085: AO356_29085 - LysR family transcriptional regulator, at 6,763,056 to 6,763,982 _29085 AO356_29090: AO356_29090 - GntR family transcriptional regulator, at 6,764,003 to 6,764,734 _29090 AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516 _29095 Position (kb) 6763 6764Strain fitness (log2 ratio) -1 0 1at 6762.209 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.691 kb on + strand, within AO356_29080at 6762.740 kb on + strand, within AO356_29080at 6762.957 kb on - strandat 6763.050 kb on + strandat 6763.051 kb on - strandat 6763.215 kb on + strand, within AO356_29085at 6763.656 kb on + strand, within AO356_29085at 6763.739 kb on + strand, within AO356_29085at 6763.739 kb on + strand, within AO356_29085at 6763.740 kb on - strand, within AO356_29085at 6764.006 kb on + strandat 6764.037 kb on + strandat 6764.241 kb on + strand, within AO356_29090at 6764.939 kb on + strand, within AO356_29095

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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6,762,209 + AO356_29080 0.26 +1.3
6,762,506 + AO356_29080 0.55 -0.2
6,762,506 + AO356_29080 0.55 -1.5
6,762,691 + AO356_29080 0.74 -1.3
6,762,740 + AO356_29080 0.79 -0.3
6,762,957 - +0.9
6,763,050 + +0.3
6,763,051 - -0.3
6,763,215 + AO356_29085 0.17 -0.7
6,763,656 + AO356_29085 0.65 -0.6
6,763,739 + AO356_29085 0.74 +0.7
6,763,739 + AO356_29085 0.74 -0.1
6,763,740 - AO356_29085 0.74 -0.1
6,764,006 + +0.8
6,764,037 + +1.1
6,764,241 + AO356_29090 0.33 -0.1
6,764,939 + AO356_29095 0.26 +0.6

Or see this region's nucleotide sequence