Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28340 and AO356_28345 are separated by 504 nucleotides AO356_28345 and AO356_28350 are separated by 51 nucleotides
AO356_28340: AO356_28340 - GABA permease, at 6,590,607 to 6,592,007
_28340
AO356_28345: AO356_28345 - TetR family transcriptional regulator, at 6,592,512 to 6,593,123
_28345
AO356_28350: AO356_28350 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,593,175 to 6,594,278
_28350
Position (kb)
6592
6593
6594 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6591.557 kb on - strand, within AO356_28340 at 6591.557 kb on - strand, within AO356_28340 at 6591.651 kb on + strand, within AO356_28340 at 6591.652 kb on - strand, within AO356_28340 at 6591.706 kb on + strand, within AO356_28340 at 6591.757 kb on + strand, within AO356_28340 at 6591.757 kb on + strand, within AO356_28340 at 6591.847 kb on + strand, within AO356_28340 at 6592.014 kb on + strand at 6592.015 kb on - strand at 6592.273 kb on + strand at 6592.274 kb on - strand at 6592.274 kb on - strand at 6592.299 kb on + strand at 6592.343 kb on - strand at 6592.343 kb on - strand at 6592.494 kb on + strand at 6592.663 kb on - strand, within AO356_28345 at 6592.963 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.020 kb on + strand, within AO356_28345 at 6593.281 kb on + strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.282 kb on - strand at 6593.395 kb on + strand, within AO356_28350 at 6593.410 kb on + strand, within AO356_28350 at 6593.496 kb on + strand, within AO356_28350 at 6593.620 kb on + strand, within AO356_28350 at 6593.629 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.668 kb on + strand, within AO356_28350 at 6593.669 kb on - strand, within AO356_28350 at 6593.669 kb on - strand, within AO356_28350 at 6593.707 kb on + strand, within AO356_28350 at 6593.707 kb on + strand, within AO356_28350 at 6593.708 kb on - strand, within AO356_28350 at 6593.835 kb on + strand, within AO356_28350 at 6593.836 kb on - strand, within AO356_28350 at 6593.844 kb on + strand, within AO356_28350 at 6593.887 kb on + strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6593.888 kb on - strand, within AO356_28350 at 6594.112 kb on + strand, within AO356_28350
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,591,557 - AO356_28340 0.68 +0.5 6,591,557 - AO356_28340 0.68 +0.1 6,591,651 + AO356_28340 0.75 -0.3 6,591,652 - AO356_28340 0.75 +1.4 6,591,706 + AO356_28340 0.78 -1.5 6,591,757 + AO356_28340 0.82 -0.2 6,591,757 + AO356_28340 0.82 +0.8 6,591,847 + AO356_28340 0.89 +0.8 6,592,014 + +0.7 6,592,015 - -1.7 6,592,273 + -0.0 6,592,274 - -0.6 6,592,274 - -0.4 6,592,299 + +0.4 6,592,343 - -0.5 6,592,343 - +0.7 6,592,494 + +0.5 6,592,663 - AO356_28345 0.25 +0.7 6,592,963 + AO356_28345 0.74 +2.2 6,593,020 + AO356_28345 0.83 +1.4 6,593,020 + AO356_28345 0.83 -0.8 6,593,020 + AO356_28345 0.83 +1.7 6,593,020 + AO356_28345 0.83 +1.7 6,593,281 + +0.3 6,593,282 - -0.0 6,593,282 - -0.5 6,593,282 - +0.1 6,593,282 - +0.6 6,593,282 - -1.3 6,593,395 + AO356_28350 0.20 -0.8 6,593,410 + AO356_28350 0.21 -1.9 6,593,496 + AO356_28350 0.29 +0.1 6,593,620 + AO356_28350 0.40 -0.6 6,593,629 + AO356_28350 0.41 +1.0 6,593,668 + AO356_28350 0.45 -3.6 6,593,668 + AO356_28350 0.45 +0.9 6,593,668 + AO356_28350 0.45 -0.8 6,593,669 - AO356_28350 0.45 -0.7 6,593,669 - AO356_28350 0.45 +0.0 6,593,707 + AO356_28350 0.48 -0.5 6,593,707 + AO356_28350 0.48 -0.2 6,593,708 - AO356_28350 0.48 +0.3 6,593,835 + AO356_28350 0.60 +0.1 6,593,836 - AO356_28350 0.60 +0.3 6,593,844 + AO356_28350 0.61 -0.4 6,593,887 + AO356_28350 0.64 -0.7 6,593,888 - AO356_28350 0.65 -0.9 6,593,888 - AO356_28350 0.65 -0.3 6,593,888 - AO356_28350 0.65 -1.3 6,594,112 + AO356_28350 0.85 +0.5
Or see this region's nucleotide sequence